Data from the QUALO program, shoreline water quality from the Aquatic Environment Monitoring Network.An [interactive map] (https://experience.arcgis.com/experience/38d7c7bb43da4e2082aa836689d0d318/) is also available.**This third party metadata element was translated using an automated translation tool (Amazon Translate).**

Wooded areas of interest and particular ecosystems or habitats covered by the Interim Control Regulation (RCI) Nature plan amended by Regulation 1274-2.attributs:mb_ID - Identifier of the wooded environmentCOHABparticular - Presence of a particular ecosystem or habitat - Presence of a particular ecosystem or habitat (Yes/No) INFORCI - Additional information on the Interim Control Regulation**This third party metadata element was translated using an automated translation tool (Amazon Translate).**

A research survey of Iceland scallops (Chlamys islandica) using a dredge has been carried out by DFO (Fisheries and Oceans Canada) every 1 or 2 years since 1990 in the Mingan Archipelago ( fishing areas 16E and 16F). The main objective of this research survey was to assess Icelandic Scallop stocks. Another objective was to documented taxa in the captures associated with scallop habitat according to a fixed sampling plan. Occurrences by species (or taxon) are presented by station. The taxonomic and geographical validity of the data was checked and the World Register of Marine Species served as the taxonomic authority for naming all taxa recorded during the survey. Epibenthic invertebrates (mainly molluscs, echinoderms and crustaceans) as well as demersal fish were identified from the dredge catches.The study area is located around the Mingan Archipelago and the sampling of scallop beds is carried out at depths of 8 to 136 m, generally around 40 to 60 m. Sampling is done along transects at fixed stations in the study area. Sampling is done with a lined Digby scallop dredge (20 mm mesh) over approximately 150 m along the seabed. The four baskets of the dredge are examined for all scallops. Next, a basket (the first on the starboard side) is sorted and examined for associated species. Most specimens are counted by taxa. The presence or relative abundance of undersized and numerous, or colonial, organisms is noted. Special cases are sometimes retained for taxonomic analysis, for example, ascidians (to monitor invasive species) and sponges (to document new species).

A research survey of scallops (mainly sea scallop Placopecten magellanicus, but also Icelandic Scallop Chlamys islandica) using a dredge was carried out by DFO (Fisheries and Oceans Canada) every 1 or 2 years since 1992 in the Magdalen Islands (fishing area 20). The main objective of this research survey was to assess Sea Scallop stocks. Another objective was to document taxa associated with scallop habitat according to a fixed random sampling plan. Occurrences for the year 2021 and 2022 are presented by species (or taxon) by station. Starting in 2021, catches were weighed, and specimens photographed, with information available upon request. The taxonomic and geographical validity of the data was checked and the World Register of Marine Species served as the taxonomic authority for naming all taxa recorded during the survey. Epibenthic invertebrates (mainly molluscs, echinoderms and crustaceans) as well as demersal fish were identified from the dredge catches. The historical dataset is available at the following link : https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53bThe study area is located south of the Magdalen Islands and the sampling of scallop beds is carried out at depths of generally around 25 to 35 m. A random selection of sampling stations is carried out from a fixed station grid. Sampling is done along transects at these randomly drawn stations in the study area. Sampling is done with a lined Digby scallop dredge (20 mm mesh) over approximately 500 m along the seabed. The four baskets of the dredge are examined for all scallops, and starting in 2022, also for all fishes. One basket (first on the starboard side) is sorted and examined for associated species. Most specimens are counted by taxa. Those that are too small and numerous, or colonial, are noted for presence or relative abundance. Special cases are occasionally conserved for taxonomic analysis, for example, ascidians (to monitor for invasive species) and sponges (to document new species). The availability of photos and some conserved specimens enables future review. Changes are anticipated in the identifications, notably for Bryozoan, Hydrozoa, and Porifera, that are currently the focus of research efforts.

This dataset documents the epifauna occurrences collected from 2021 to 2024 during the Canadian Beaufort Sea Marine Ecosystem Assessment (CBS-MEA) conducted by the Department of Fisheries and Oceans (DFO). This scientific program focuses on the integration of oceanography, food web linkages, physical-biological couplings, and spatial and interannual variabilities. The program also aims to expand the baseline coverage of species diversity, abundances, and habitat associations in previously unstudied areas of the Beaufort Sea and Western Canadian Archipelago. The study took place mainly in the Canadian Beaufort Sea and the Amundsen Gulf. Sampling is done along transects at fixed stations in the study area. Catches are collected with a 3 m benthic beam trawl for 10 minutes bottom-contact time at a target speed of 2 knots and with a modified Atlantic Western IIA otter trawl for 20 minutes bottom-contact time at a target speed of 2.9 knots. A total of 32 stations were sampled for epifauna in 2021, 22 in 2022, 23 in 2023 and 22 in 2024, between 22-655 m depth. Epibenthic invertebrates were identified to the lowest taxonomic level possible and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The "Activité_épifaune_CBSMEA_epifauna_event_en" file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "Occurrence_épifaune_CBSMEA_epifauna_en" file that contains the taxonomic occurrences.

This dataset documents the infauna occurrences collected from 2021 to 2024 during the Canadian Beaufort Sea Marine Ecosystem Assessment (CBS-MEA) conducted by the Department of Fisheries and Oceans (DFO). This scientific program focuses on the integration of oceanography, food web linkages, physical-biological couplings, and spatial and interannual variabilities. The program also aims to expand the baseline coverage of species diversity, abundances, and habitat associations in previously unstudied areas of the Beaufort Sea and Western Canadian Archipelago. The study took place mainly in the Canadian Beaufort Sea and the Amundsen Gulf. Sampling is done along transects at fixed stations in the study area. Catches are collected using a 50 x 50 cm box-corer. Two or three box core are collected per station to obtain replicates. A total of 29 stations were sampled for infauna in 2021, 14 in 2022, 21 in 2023 and 24 in 2024 between 21-653 m depth. Half of the box corer (0.125 m2) is sampled for infauna taxonomy. The first 20 cm of sediment are collected and sieved through a 0.5 mm mesh sieve. The samples are preserved in seawater-formaldehyde solution (10 % v/v). In the lab, infauna is identified to the lowest taxon level possible.The data are presented in two files:The "endofaune_evenement_infauna_event_en" file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "endofaune_occurrence_infauna_en" file that contains the taxonomic occurrences.

A research survey on Stimpson's surfclam (Mactromeris polynyma) was conducted from June 15 to June 26 2017 in the Estuary of the St. Lawrence River on the Forestville deposit (Fishing Area 1A). The primary objective of this survey was to investigate the spatial distribution of pre-commercial (< 80 mm) and commercial (≥ 80 mm) sizes of Stimpson's surfclams as well as to assess the abundance and diversity of benthic species associated with the sandy habitat of the Stimpson's surfclam. Only benthic species data associated with Stimpson's surfclam habitat are presented in this dataset.Data were collected according to a systematic sampling design consisting of 77 stations, between 7 and 45 m depth. Stations were spaced 200 m apart and dispersed along a total of 18 transects perpendicular to the bathymetry. Transects were parallel and spaced 500 m apart. Specimens were collected using a hydraulic dredge of the "New England" type with a total length of 2.29 meters and a total width of 1.68 meters, of which 1.35 meters was knife width. The dredge was lined with a 19 millimeter mesh Vexar™ to harvest small individuals. The hauls were made at a speed of 0.2-0.3 knots for a duration of 2 to 3 minutes. Start and end positions were recorded to calculate the distance traveled at each tow using the geosphere library in R. The average tow distance was approximately 25 m. The area covered at each stroke was the product of the width of the dredge blade and the distance.The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca).For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

Bay-scale empirical demonstrations of how bivalve aquaculture alters plankton composition, and subsequently ecological functioning and higher trophic levels, are lacking. Temporal, inter- and within-bay variation in hydrodynamic, environmental, and aquaculture pressure limit efficient plankton monitoring design to detect bay-scale changes and inform aquaculture ecosystem interactions. Here, we used flow cytometry to investigate spatio-temporal variations in bacteria and phytoplankton (< 20 µm) composition in four bivalve aquaculture embayments. We observed higher abundances of bacteria and phytoplankton in shallow embayments that experienced greater freshwater and nutrient inputs. Depleted nutrient conditions may have led to the dominance of picophytoplankton cells, which showed strong within-bay variation as a function of riverine vs freshwater influence and nutrient availability. Although environmental forcings appeared to be a strong driver of spatio-temporal trends, results showed that bivalve aquaculture may reduce near-lease phytoplankton abundance and favor bacterial growth. We discuss aquaculture pathways of effects such as grazing, benthic-pelagic coupling processes, and microbial biogeochemical cycling. Conclusions provide guidance on optimal sampling considerations using flow cytometry in aquaculture sites based on embayment geomorphology and hydrodynamics.Cite this data as: Sharpe H, Lacoursière-Roussel A, Barrell J (2024). Monitoring bay-scale bivalve aquaculture ecosystem interactions using flow cytometry. Version 1.2. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=monitoring_bay-scale_bivalve_aquaculture_ecosystem_interactions_using_flow_cytometry&v=1.2

The Adaptive Management Framework for Yukon placer mining is complemented by traditional knowledge and monitoring of water quality objectives, aquatic health, and economic health. The aquatic health monitoring program is governed by the Aquatic Health Monitoring Protocol. The Protocol describes the locations, timing, frequency and methods employed during sampling, as well as the methods used to analyze sampling data. The Reference Condition Approach (RCA) is the method chosen for assessing the health of freshwater ecosystems in the Yukon. One RCA model was developed for bioassessment based upon benthic macroinvertebrates, and a second model was developed to assess the diversity of fish species. The RCA model for invertebrates relies upon 224 reference sites collected over the period 2004 to 2010 by the University of Western Ontario, Fisheries and Oceans Canada, and Yukon G overnment, using the same standard protocol. The invertebrate data set was analyzed at the family level. There are two fundamental steps in the process of developing the predictive model. The first is to classify the reference sites based on their biological characteristics. This requires defining a number of community types based on the taxonomic composition. The second step is to determine a subset of habitat attributes that are associated with those community types. Following this step the number and type of organisms expected to occur at any given site can be determined from habitat attributes. For more information, contact the Yukon Placer Secretariat.Distributed from [GeoYukon](https://yukon.ca/geoyukon) by the [Government of Yukon](https://yukon.ca/maps) . Discover more digital map data and interactive maps from Yukon's digital map data collection.For more information: [geomatics.help@yukon.ca](mailto:geomatics.help@yukon.ca)

A derivative of DFO’s benthic species survey for the Strategic Program for Ecosystem-based Research and Advice (SPERA) (open data record ID: e736c0f0-b19e-4842-903d-28bfc756d48a), this benthic survey funded through the Canadian Healthy Oceans Network (CHONeII) looks at the presence/absence and abundance of two biogenic habitat-forming species that are listed as vulnerable to disturbance in a subset of 50 drift camera transects in the ‘Head Harbour/West Isles Archipelago/The Passages’ Ecologically and Biologically Significant Area (EBSA) in the Bay of Fundy, New Brunswick, Canada (~113km2). Presence/absence and abundance data of the stalked sea squirt (Boltenia ovifera) and horse mussel (Modiolus modiolus) were derived from the use of high-resolution Nikon D800 36.1 megapixel still images (n=2576, see link to parent record for more descriptive survey information) to be used in species distribution modelling. Image field of view (FOV) was estimated using a 10 cm-wide trigger weight for scale,and standardized across images using the average FOV estimate (0.75 x 0.5 m) across a subset of 200 images. Species counts were then converted to abundance estimates (number of individuals per square-meter) by dividing counts by 0.375m2. Boltenia ovifera was observed at densities reaching 456 ind./m2, while Modiolus modiolus density reached a maximum of 240 ind./m2.Cite this data as: Mireault C.A., Lawton P., Devillers R. and Teed L. Presence/absence and abundance of vulnerable marine ecosystem species Boltenia ovifera and Modiolus modiolus in the lower Bay of Fundy derived from high resolution still imagery. Published September 2023. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/152ae3f1-d2b9-43d9-a7b4-d769d9e9fc41