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We have found 230 datasets for the keyword " biology". You can continue exploring the search results in the list below.
Datasets: 103,380
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230 Datasets, Page 1 of 23
Monthly Satellite Chlorophyll-a Climatology of the Canadian Pacific Exclusive Economic Zone (2003-2020) - 4 km Resolution
Description:Chlorophyll-a concentration (a proxy for phytoplankton biomass) was retrieved from the MODIS instrument on the Aqua satellite, with data distributed by the NASA Ocean Biology Processing Group, and averaged into monthly climatological composites. The data span the years 2003-2020 and this record includes data at 4 km pixel resolution.Methods:MODIS-Aqua Chlorophyll-a (Chl-a) was acquired from the NASA Ocean Biology Processing Group at processing Level-3 (version 2018), 4-km resolution, where Chl-a concentration was calculated using the OC3/OCI method. The months of January and December were excluded from this dataset, as data in the winter months at higher latitudes are missing due to low sun angle preventing acquisition. The monthly geometric mean value at all pixels was calculated for individual years, then the geometric mean and geometric standard deviation factor of chlorophyll-a were calculated by month from these images. These methods of calculating mean and standard deviation were used due to the log-normal distribution of chlorophyll-a. The geometric standard deviation is a unitless factor, where the lower bound is the ratio of the geometric mean and geometric standard deviation, and the upper bound is the multiplication of the two. In addition to the geometric mean and geometric standard deviation factor the number of occurrences of valid data at each pixel over the period of observation were calculated. Pixels with fewer than two occurrences over the entire period of observation were removed from these maps, and set to a NaN value in the tif files. All resulting rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.0417 degrees. The monthly geometric mean, monthly geometric standard deviation factor, and number of occurrences for all pixels are provided.Data Sources:NASA Ocean Biology Processing Group. (2017). MODIS-Aqua Level 2 Ocean Color Data Version R2018.0. NASA Ocean Biology Distributed Active Archive Center. https://doi.org/10.5067/AQUA/MODIS/L2/OC/2018Uncertainties:Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.
Monthly Satellite Sea Surface Temperature Climatology of the Canadian Pacific Exclusive Economic Zone (2003-2020) – 1 km Resolution
Description:Night-time sea surface temperature (SST) was retrieved from the MODIS instrument on the Aqua satellite, with data distributed by the NASA Ocean Biology Processing Group, and averaged into monthly climatological composites. The data span the years 2003-2020; records were created at 1 km pixel resolution to be consistent with other satellite products.Methods:MODIS-Aqua night long-wave Sea Surface Temperature (SST) images were acquired from the NASA Ocean Biology Processing Group at processing Level-2 (version 2018), 1-km resolution, spanning the period 2003-01-01 to 2020-12-31. Image pixels were aligned and mapped to a regular grid using the SeaDAS program, retaining all pixels with a quality level of ‘1’ or lower, which is recommended for scientific analysis. The monthly mean value at all pixels was calculated for individual years, and used to produce maps of the monthly climatological mean and standard deviation of SST. Additionally, the number of occurrences of valid data at each pixel over the period of observation were calculated. Pixels with fewer than two occurrences over the entire period of observation were removed from these maps, and set to a NaN value in the tif files. A few small gaps between pixels (near the edges of individual images) were filled using the median value of surrounding pixels, provided there were greater than 4 values. Finally, all rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.01 degrees. The monthly mean, monthly standard deviation, and number of occurrences for all pixels are provided.Data Sources:NASA Ocean Biology Processing Group. (2017). MODIS-Aqua Level 2 Ocean Color Data Version R2018.0. NASA Ocean Biology Distributed Active Archive Center. https://doi.org/10.5067/AQUA/MODIS/L2/OC/2018Uncertainties:Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.
Monthly Satellite Chlorophyll-a Climatology of the Canadian Pacific Exclusive Economic Zone (2003-2020) - 1 km Resolution
Description:Chlorophyll-a concentration (a proxy for phytoplankton biomass) was retrieved from the MODIS instrument on the Aqua satellite, with data distributed by the NASA Ocean Biology Processing Group, and averaged into monthly climatological composites. The data span the years 2003-2020 and this record includes data at 1 km pixel resolution.Methods:MODIS-Aqua Chlorophyll-a (Chl-a) was acquired from the NASA Ocean Biology Processing Group at processing Level-2 (version 2018), 1-km resolution, where Chl-a concentration was calculated using the OC3/OCI method. The months of January and December were excluded from this dataset, as data in the winter months at higher latitudes are missing due to low sun angle preventing acquisition. The pixels were aligned on a regular grid using the SeaDAS program, after which the monthly geometric mean value at all pixels was calculated for individual years. Finally, the geometric mean and geometric standard deviation factor of chlorophyll-a were calculated by month from these images. These methods of calculating mean and standard deviation were used due to the log-normal distribution of chlorophyll-a. The geometric standard deviation is a unitless factor, where the lower bound is the ratio of the geometric mean and geometric standard deviation, and the upper bound is the multiplication of the two. In addition to these variables, the number of occurrences of valid data at each pixel over the period of observation were calculated. Pixels with fewer than two occurrences over the entire period of observation were removed from these maps, and set to a NaN value in the tif files. A few small gaps between pixels (near the edges of individual images) were filled using the median value of surrounding pixels, provided there were greater than 4 values. Finally, all rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.01 degrees. The monthly geometric mean, monthly geometric standard deviation factor, and number of occurrences for all pixels are provided.Data Sources:NASA Ocean Biology Processing Group. (2017). MODIS-Aqua Level 2 Ocean Color Data Version R2018.0. NASA Ocean Biology Distributed Active Archive Center. https://doi.org/10.5067/AQUA/MODIS/L2/OC/2018Uncertainties:Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.
Year-round utilization of sea ice-associated carbon in Arctic ecosystems
This record contains a comprehensive synthesis of previously published highly branched isoprenoid (HBI) results, providing a quantitative spatial and temporal assessment of carbon partitioning within the Arctic marine ecosystem and validating estimates of sea-ice particulate organic carbon (iPOC) values as quantitative predictors of ice algal carbon in Arctic food webs.This publication was a collaborative effort with the following contributors: David Yurkowski (Fisheries and Oceans Canada), Lisa Loseto (Fisheries and Oceans Canada), Steve Ferguson (Fisheries and Oceans Canada), Bruno Rosenberg (Fisheries and Oceans Canada), C.W. Koch (Natural History Museum, London, UK; University of Maryland Center for Environmental Science, Maryland, US); T.A. Brown (Scottish Association for Marine Science, Oban, Scotland); R. Amiraux (Centre for Earth Observation Science, University of Manitoba, Canada); C. Ruiz-Gonzalez (Scottish Association for Marine Science, Oban, Scotland); M. Maccorquodale (Scottish Association for Marine Science, Oban, Scotland); G. Yunda-Guarin (Québec-Océan and Takuvik, Biology Department, Laval University, Canada); D. Kohlbach (Norwegian Polar Institute, Fram Centre, Tromsø, Norway); N.E. Hussey (Integrative Biology, University of Windsor, Ontario, Canada).
Northern marine coastal and ecosystem studies in the Canadian Beaufort Sea—sampling information
The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment.
Northern Marine Coastal and Ecosystem Studies in the Canadian Beaufort Sea—sample locations
The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment. This record contains the geographic coordinates and station names from 2005 to 2008.
Northern marine coastal and ecosystem studies in the Canadian Beaufort Sea—water quality data
The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment.This record contains water chemistry data collected as part of this project including suspended nitrogen, dissolved nitrogen, suspended phosphorus, dissolved phosphorus, dissolved organic carbon, suspended carbon, chlorophyll a, and suspended silicon.
Integrating Gut Microbiota and Population Genomics in White Hake (Urophycis tenuis): Supporting Data
PURPOSE:The purpose of this work was to determine (1) how the population genomic structure relates to gut microbiota composition of White Hake (Urophycis tenuis), and (2) whether microbiota community variation provides complementary insights into population structure of this species in eastern Canada.DESCRIPTION:Integrating host-associated microbiota with genomic approaches offers an opportunity to better understand the multiple biological dimensions shaping population structure in marine fishes. A clear understanding of population structure and dynamics is essential for informed fisheries management and conservation decisions; however, while genomic approaches have greatly improved our ability to delineate biological populations, they provide only a partial representation of biological structure, as patterns of differentiation reflect both historical divergence and contemporary ecological conditions. Host-associated microbiota can influence population-level ecological processes by contributing functional, potentially heritable variation that shapes host phenotype and fitness.In this study, we combined genotyping-by-sequencing with 16S rRNA gene amplicon sequencing to examine how population genomic structure relates to gut microbiota composition and to evaluate whether microbiota community variation provides complementary insights into population structure in White Hake (Urophycis tenuis) in eastern Canada. Genomic analyses identified two populations with greater spatial overlap than previously reported. Variation partitioning revealed that host genetics explained a negligible proportion of microbiota variation compared to environmental factors and fish length, suggesting that ontogenetic shifts in habitat use and resource acquisition influence gut microbiota composition. Several taxa were differentially abundant among fish length categories used as a proxy for diet, including taxa with chitin-degrading potential such as Photobacterium and Lachnospirales, which were enriched in smaller fish known to consume a crustacean-dominated diet. Together, these results indicate that gut microbiota composition in White Hake primarily reflects ecological and life-history processes rather than host population structure. PARAMETERS COLLECTED:Environmental parameters were also collected at most sampling sites, including depth, water temperature, oxygen and salinity levels.PHYSICAL SAMPLE DETAILS:Fin samples were collected to characterize the fish genotypes. Intestine (rectum) samples were collected to study fish gut microbiome.SAMPLING METHODS:In 2022 and 2023, White Hake were sampled during Fisheries and Oceans Canada (DFO) annual bottom trawl ecosystem monitoring surveys.USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.
Biodiversity of the Benthic Epifauna Trawl Survey from KEBABB program (2021)
This resource documents a dataset of epifauna occurrences collected in 2021 during The Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) program developed by the Department of Fisheries and Oceans Canada (DFO) in collaboration with university partners. The overall objective of KEBABB is to characterize the variability and trends in physical, chemical, and biological oceanographic conditions and food webs supporting fisheries in the connected ecosystems of western Baffin Bay and Lancaster Sound. In 2021, DFO expanded the KEBABB program to Barrow Strait (KEBABS-Knowledge and Ecosystem-Based Approach in Barrow Strait), a key productive area of the Tallurutiup Imanga National Marine Conservation Area. The study took place in the Eastern Canadian Arctic (mainly in Baffin Bay, Davis Strait and Barrow Strait). Sampling is done along transects at fixed stations in the study area. Catches are collected with a 1.5 m Agassiz trawl (5 mm mesh net) for 3 minutes bottom-contact time at a target speed of 1.5 knots and with a 3 m benthic beam trawl (6.4 mm mesh net) for 15 minutes bottom-contact time at a target speed of 3 knots. A total of 16 stations were sampled for epifauna in 2021 between 85-850 m depth. Epibenthic invertebrates are identified to the lowest possible taxonomic level and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The “Activité_épifaune_KEBABB_epifauna_event_en” file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The “Occurrence_épifaune_KEBABB_epifauna_en” file that contains the taxonomic occurrences.Further details on sampling can be found in the following report: Pućko, M., Charette, J., Tremblay P., Brulotte S., St-Denis B., Ciastek S., Hedges, K., Kuzyk, Z., Roy V., and Michel, C. 2022. An ecosystem-based approach in the eastern Arctic: KEBABB/S (Knowledge and Ecosystem-Based Approach in Baffin Bay/Barrow Strait) 2021 expedition report. Can. Manuscr. Rep. Fish. Aquat. Sci. 3250: viii + 58 p. https://publications.gc.ca/collections/collection_2022/mpo-dfo/Fs97-4-3250-eng.pdfUSE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.
Biologic and Ecologic
BiologicEcologic ISO Feature Dataset symbolization and publication. September 5, 2017.
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