The Canadian Aquatic Biomonitoring Network (CABIN) is an aquatic biomonitoring program for assessing the health of fresh water ecosystems in Canada. Benthic macroinvertebrates are collected at a site location and their counts are used as an indicator of the health of that water body. CABIN is based on the network of networks approach that promotes inter-agency collaboration and data-sharing to achieve consistent and comparable reporting on fresh water quality and aquatic ecosystem conditions in Canada. The program is maintained by Environment and Climate Change Canada (ECCC) to support the collection, assessment, reporting and distribution of biological monitoring information. A set of nationally standardized CABIN protocols are used for field collection, laboratory work, and analysis of biological monitoring data. A training program is available to certify participants in the standard protocols. There are two types of sites in the CABIN database (reference and test). Reference sites represent habitats that are closest to “natural” before any human impact. The data from reference sites are used to create reference models that CABIN partners use to evaluate their test sites in an approach known as the Reference Condition Approach (RCA). Using the RCA models, CABIN partners match their test sites to groups of reference sites on similar habitats and compare the observed macroinvertebrate communities. The extent of the differences between the test site communities and the reference site communities allows CABIN partners to estimate the severity of the impacts at those locations. CABIN samples have been collected since 1987 and are organized in the database by study (partner project). The data is delineated by the 11 major drainage areas (MDA) found in Canada and each one has a corresponding study, habitat and benthic invertebrate data file. Links to auxiliary water quality data are provided when available. Visits may be conducted at the same location over time with repeat site visits being identified by identical study name / site code with different dates. All data collected by the federal government is available on Open Data and more partners are adding their data continually. The csv files are updated monthly. Contact the CABIN study authority to request permission to access non open data.

Programs that perform a laboratory analysis of body fluids and tissue to determine the presence of irregularities or to identify unknown substances submitted for analysis. Definition is protected by Copyright by Information and Referral Federal of Los Angeles County, Inc (https://211taxonomy.org/subscriptions/#agreement)

The Shorezone Biobanding Lines are a linear representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.

The Shorezone Biobanding Polygons are an area representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b

The Marine Geoscience for Marine Spatial Planning (MGMSP) program, implemented byNatural Resources Canada (NRCan), is an initiative with the goal of offering innovativeregional geoscience products to support the Department of Fisheries and Oceans (DFO) intheir Marine Spatial Planning endeavors. To develop spatial management plans for variousexpansive bioregions across Canada, the DFO has undertaken the task of creatingcomprehensive ocean management strategies. Presently, the MGMSP program isconcentrating its efforts on two significant bioregions, namely the Scotian Shelf andNewfoundland and Labrador Shelves bioregions.In pursuit of this objective, the work presented in this report has focused on theassimilation and gridding of numerous disparate bathymetry datasets sourced fromauthoritative and reliable channels. The purpose of this comprehensive data gatheringapproach is to establish a unified bathymetric grid, with a consistent spatial resolution,which can be utilized in both oceanographic modeling and geological interpretation. Bycollating information from a diverse range of sources, we aim to create a comprehensiveand reliable foundation that will enable accurate and informed decision-making in the fieldof marine spatial planning, as well as enhance the accuracy and reliability of subsequentanalyses and simulations.

Bioterrain Mapping (TBT) Detailed Polygons (STE_TER_BIOTERRAIN_POLYS_SVW) contains TBT polygons with key and amalgamated (concatenated) attributes derived from the Resource Inventory Standards Committee (RISC) standard attributes. This layer is derived from the [STE_TEI_ATTRIBUTE_POLYS_SP](https://catalogue.data.gov.bc.ca/dataset/f2cd2cc3-5f58-481c-bf3c-64934acb6fad) layer by filtering on the PROJECT_TYPE attribute. Project types include: TEM, TEMNSS, TEMPRE, TEMSEI, TEMSET, TEMTSM, TBS, TBT, TEMWHR, TEMSDM, TEMPRW, and PEMTBT. TBT divides the landscape into units using the Terrain Classification System for British Columbia and ecological criteria. Polygon attributes include (but are not limited to) surficial material, surface expression, geomorphological processes, drainage class and aspect. TBT methods include manual air photo interpretation supported by selective field checking. Bioterrain mapping is integral to ecosystem mapping and its derivative products. TBT Detailed Polygon layer should be used in conjunction with [TER Project Boundaries](https://catalogue.data.gov.bc.ca/dataset/ad2f6d1e-cb53-4308-9263-e8deb731b996) which contain boundaries (study areas) and attributes describing each project (project level metadata), plus links to the locations of other data associated with the project (e.g., reports, polygon datasets, plotfiles, legends). TBT inventory polygons with full RISC attributes can be accessed through the [Terrestrial Ecosystem Information (TEI) Data Distribution Packages](https://catalogue.data.gov.bc.ca/dataset/8fd15e4e-e7b1-4566-81d1-1ff8947bfd46). **Current version**: v12 (2026-06-22)

PURPOSE:The purpose of this work was to determine (1) how the population genomic structure relates to gut microbiota composition of White Hake (Urophycis tenuis), and (2) whether microbiota community variation provides complementary insights into population structure of this species in eastern Canada.DESCRIPTION:Integrating host-associated microbiota with genomic approaches offers an opportunity to better understand the multiple biological dimensions shaping population structure in marine fishes. A clear understanding of population structure and dynamics is essential for informed fisheries management and conservation decisions; however, while genomic approaches have greatly improved our ability to delineate biological populations, they provide only a partial representation of biological structure, as patterns of differentiation reflect both historical divergence and contemporary ecological conditions. Host-associated microbiota can influence population-level ecological processes by contributing functional, potentially heritable variation that shapes host phenotype and fitness.In this study, we combined genotyping-by-sequencing with 16S rRNA gene amplicon sequencing to examine how population genomic structure relates to gut microbiota composition and to evaluate whether microbiota community variation provides complementary insights into population structure in White Hake (Urophycis tenuis) in eastern Canada. Genomic analyses identified two populations with greater spatial overlap than previously reported. Variation partitioning revealed that host genetics explained a negligible proportion of microbiota variation compared to environmental factors and fish length, suggesting that ontogenetic shifts in habitat use and resource acquisition influence gut microbiota composition. Several taxa were differentially abundant among fish length categories used as a proxy for diet, including taxa with chitin-degrading potential such as Photobacterium and Lachnospirales, which were enriched in smaller fish known to consume a crustacean-dominated diet. Together, these results indicate that gut microbiota composition in White Hake primarily reflects ecological and life-history processes rather than host population structure. PARAMETERS COLLECTED:Environmental parameters were also collected at most sampling sites, including depth, water temperature, oxygen and salinity levels.PHYSICAL SAMPLE DETAILS:Fin samples were collected to characterize the fish genotypes. Intestine (rectum) samples were collected to study fish gut microbiome.SAMPLING METHODS:In 2022 and 2023, White Hake were sampled during Fisheries and Oceans Canada (DFO) annual bottom trawl ecosystem monitoring surveys.USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

BiologicEcologic ISO Feature Dataset symbolization and publication. September 5, 2017.

Mean zooplankton biomass (g/m³) at the 46 stations grouped into Atlantic Zone Monitoring Program (AZMP) transects under Quebec region responsibility.Mean zooplankton wet weights of the last ten years are displayed as 4 layers in june (2013-2022, 2020 not sampled) and 4 layers in november (2013-2022). The 4 layers stand for total zooplankton, mesozooplankton, macrozooplankton and euphausiids. The attached files contain the biomass data: a .png file for each station, showing time series of biomass for the total zooplankton and the euphausiids, and a .csv file containing the data themselves (columns : Station,Date(UTC), Latitude, Longitude, Sounding(m), Depth_max/Profondeur_max(m), Depth_min/Profondeur_min(m), Mesozooplankton/Mésozooplancton(g/m³), Macrozooplankton/Macrozooplancton(g/m³), Zooplankton/Zooplancton(g/m³), Euphausiids/Euphausides(g/m³)).PurposeThe Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.Supplemental InformationZooplankton is sampled by bottom-surface vertical net tow with a conic 202 µm net and preserved in a 4% solution of buffered formaldehyde according to AZMP sampling protocol:Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.