Aquatic invasive species pose economic and ecological threats to Canada's coastal waters. In response, Fisheries and Oceans Canada (DFO) has established monitoring programs to detect and track the spread of aquatic invasive species, including European Green Crab, in Canadian waters. Fukui traps have been deployed annually at both new and long-term monitoring locations throughout coastal British Columbia.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b

PURPOSE:Provide presence/absence and abundance data for the non-indigenous and invasive European green crab (EGC) in selected southern Gulf of St. Lawrence (sGSL) estuaries along the Northumberland Strait coast of New-Brunswick and eastern Prince-Edward-Island.DESCRIPTION:Temporal monitoring during ice-free seasons of European green crab abundance is completed in response to previous regional population declines in the Maritime provinces. Note that where presence is not indicated on the map does not mean absence - this survey is limited to a few sites.Traps that did not fish correctly were not included in the dataset. Examples of defective traps include: an open trap, an open bait container, a trap filled with algae and falling into the open position, a trap that has not been fished for over 48 hours, an overturned trap, or a trap that has been significantly moved or otherwise tampered with.Population estimates are not derived from this data. PARAMETERS COLLECTED:1) EGC count, size measurement, sex, and catch weight2) Counts of bycatch species. Categories reported in this dataset are finfish (cunner, striped bass, mummichog, winter flounder, smooth flounder, sculpin, tomcod, American eel, banded killifish, flounder, unknown bony fish), Atlantic rock crab, American lobster, and other (lion's mane jellyfish, moon jellyfish, other crabs, moon snail). Other smaller species were often in the trap but were not included as bycatch in this dataset as they can easily escape the mesh size and would not consistently be trapped. 3) Environmental data: water depth at trap setting, sediment type, vegetation types noted, salinity, water temperature, dissolved oxygen (not included), specific conductance (not included), conductivity (not included), weather, cloud cover (not included), tide state and direction (upon fishing).NOTES ON QUALITY CONTROL:Data entry of morphological parameters randomly verified for accuracy.Weights are not reported for PEI sites due to inconsistencies with types of weighing scales and measurement protocols.PHYSICAL SAMPLE DETAILS:Whole European green crab specimensSAMPLING METHODS:Baited trapping with Fukui traps. Bait was in a bait can or bag. Types of bait included herring (predominant type used), as well as other species when herring were not available (gaspereau, canned fish [tuna, kippers, snack sardines], mackerel, tilapia, and perch).USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

This dataset includes metrics of eelgrass size, cover, and biomass from field sites along the Atlantic coast of Nova Scotia, Canada. Field sites were located across a gradient of environmental conditions, and field sampling was conducted in July to August 2022. Eelgrass percent cover, shoot density, and plants were sampled at 10 haphazardly distributed sampling stations within each eelgrass bed at approximately the same depth. Stations were ~10m apart and at least 2m from any eelgrass-bare interface. At each sampling station eelgrass leaves in a 0.5 x 0.5m quadrat were photographed for later computer image analysis to determine percent cover. The number of shoots were then counted in a 0.25 x 0.25m quadrat, and 3 vegetative shoots were collected. Shoots were measured for leaf length, width, and weight in the laboratory. These data were used to determine allometric and cover-biomass relationships for use in non-destructive estimation of bed biomass. Cite this data as: Wong, M.C., & Thomson, J. A. Data of eelgrass (Zostera marina) plant size (length, width), cover, and biomass from the Atlantic Coast of Nova Scotia. Published: February 2025. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS.For additional information please see:Thomson, J. A., Vercaemer, B., & Wong, M. C. (2025). Non-destructive biomass estimation for eelgrass (Zostera marina): Allometric and percent cover-biomass relationships vary with environmental conditions. Aquatic Botany, 198, 103853. https://doi.org/10.1016/j.aquabot.2024.103853

This data record contains four digitized maps recreated from an original report entitled An Ecological Sketch of Some Fundy Fisheries published by the Conservation Council of New Brunswick. The selected maps summaries information obtained from active and retired fishermen, combined with a survey of the scientific and historical information. They illustrate knowledge on spawning, migration, and nursery grounds for herring and other fisheries for Grand Manan, Bay of Fundy, and Gulf of Maine.Cite this data as: Coon, D. 1999. An Ecological Sketch of Some Fundy Fisheries. Conservation Council of New Brunswick, Fredericton, NB. 32 pp. Published: June 2026. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NShttps://open.canada.ca/data/en/dataset/d09eee14-4786-4787-a596-9ddec1ad9342

Historical finds of Profenusa thomsoni

Historical finds of Fenusa pumila

Sexual reproduction is critical to the resilience of seagrass beds impacted by habitat degradation or environmental changes, as robust seed banks allow new shoots to establish each year. Reproductive strategies of seagrass beds range on a continuum from strictly annual to perennial, driven by local environmental conditions. We examined the reproductive dynamics of Zostera marina beds at six sites on the Atlantic coast of Canada to characterize how life history strategies are shaped by the surrounding environment. Sites were categorized as wave protected and wave exposed, where protected sites were warm, shallow, with little water movement and muddy sediments, and exposed sites were either shallow or deep, with cooler water and sandy sediments. While mixed life history strategies were evident at all sites, protected eelgrass beds exhibited both the highest and lowest sexual reproductive effort relative to exposed beds. These beds regularly experienced thermal stress, with higher temperature range and extended warm water events relative to exposed beds. The development of reproductive shoots were similar across sites with comparable Growing Degree-days at the beginning and end of anthesis, but the First Flowering Date was earlier at the protected warmer sites relative to exposed sites. With different reproductive shoot density among sites, seed production, seed retention, and seedling recruitment also varied strongly. Only one site, located in a warm, shallow and protected lagoon, contained a mixed life history population with a high reproductive effort (33.7%), strong seed bank, and high seedling establishment. However, a primarily perennial population with the lowest reproductive effort (0.5%) was identified at the warmest site, suggesting that conditions here could not support high sexual reproduction. Robustness of seed banks was strongly linked to reproductive shoot density, although the role of seed retention, germination and seedling survival require further investigation. Our study provides insights into one key aspect of seagrass resilience, and suggests that resilience assessments should include reproductive shoot density to inform their management and conservation.Cite this data: Vercaemer B. and Wong M. Reproductive ecology of Zostera marina L. (eelgrass) across varying environmental conditions. Published: May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/56cfea6f-aeca-47ed-94ab-c519d9e63c91

This dataset includes metrics of eelgrass traits related to bed structure, morphology, and physiology from field sites along the Atlantic coast of Nova Scotia, Canada. Field sites were located across a gradient of temperature and light conditions. Sampling was conducted in July to August, in 2017, 2021, and 2022. Seagrass density and plants were sampled at 10 haphazardly distributed sampling stations within each seagrass bed at approximately the same depth. Stations were ~10m apart and at least 2m from any seagrass-bare interface. Quadrats were used to determine vegetative and reproductive shoot density. Three plants from each sampling station were collected and processed in the laboratory for length and width leaf 3, number leaves per shoot, rhizome width, rhizome water soluble carbohydrates, and total leaf chlorophyll. Also included in this data temperature and light metric that summarize temperature and light conditions during the summer period.Cite this data as: Wong, M.C., Dowd, M. Data of eelgrass (Zostera marina) traits from the Atlantic Coast of Nova Scotia. Published: February 2025. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS.For additional information please see:Wong, M.C., Dowd, M. Eelgrass (Zostera marina) Trait Variation Across Varying Temperature-Light Regimes. Estuaries and Coasts 48, 13 (2025). https://doi.org/10.1007/s12237-024-01439-3

This shapefile dataset was designed using polygons extracted from the Cartography of Coastal Ecosystems of Maritime Quebec geodatabase (2022, Laboratory for Dynamics and Integrated Management of Coastal Zones, Fisheries and Oceans Canada), described in the paragraph below. It consists of polygons with eelgrass and incorporates attributes describing the vegetation cover, the composition of the seagrass beds, the associated ecosystem name, the imagery data that allowed photo-interpretation and the presence or absence of field data. A unique sequence number associated with each polygon makes it possible to trace the paired polygon of the geodatabase of coastal ecosystems to attribute values not detailed in this shapefile. The study area includes all of the estuarine and maritime coasts of Quebec, with the exception of certain sectors, including most of the Lower North Shore and Anticosti Island, with the exception of villages of Kegaska, la Romaine, Chevery, Blanc-Sablon and Port-Menier. Some islands off the estuary and gulf coasts are part of the region covered, such as Île d'Orléans, Isle-aux-Coudres, Île Verte and Île Bonaventure.The Mapping of Coastal Ecosystems of Maritime Quebec was carried out jointly by the Laboratory for Dynamics and Integrated Coastal Zone Management (LDGIZC) of the University of Quebec at Rimouski as part of the Coastal Resilience Project; and by the Fisheries and Oceans Canada team, as part of the Integrated Marine Response Planning Program (IMRP). A classification of coastal ecosystems was carried out on more than 4,200 km of coastal corridor, focusing on estuarine and maritime coasts of Quebec located between the limit of the upper foreshore and the shallow infralittoral (about 10m deep). The mapping method developed is based on semi-automated segmentation and a photo-interpretation of coastal ecosystems, using very high resolution multispectral photographs (RBVI) acquired between 2015 and 2020 by DFO. The classification of polygons is based on the assignment of predefined value classes for the biological and physical attributes under study (e.g., substrates, plant type, vegetation cover, geosystem, etc. ). Helicopter-born oblique photographs and field data helped to reduce the uncertainty associated with photo-interpretation. UQAR and DFO conducted field sampling campaigns targeting the mediolittoral (4,390 stations) and the lower mediolittoral and infralittoral zones (2,959 stations), respectively , which validated some of the attributes identified by photo-interpretation and provided detailed information on community structure . The geodatabase of the Mapping of coastal ecosystems is hosted and managed by UQAR on their SIGEC-Web cartographic platform: https://ldgizc.uqar.ca/Web/sigecwebCredits © DFO (2023, Fisheries and Oceans Canada)Provencher-Nolet, L., Paquette, L., Pitre, L.D., Grégoire, B. and Desjardins, C. 2024. Cartographie des macrophytes estuariens et marins du Québec. Rapp. Tech. Can. Sci. halieut. Aquat. 3617 : v + 99 p.Grégoire, B., Pitre, L.D., Provencher-Nolet, L., Paquette, L. and Desjardins, C. 2024. Distribution d’organismes marins de la zone côtière peu profonde du Québec recensés par imagerie sous-marine de 2017 à 2021. Rapp. tech. can. sci. halieut. aquat. 3616 : v + 78 p.Grégoire, B. 2022. Biodiversité du relevé côtier Planification pour une intervention environnementale intégrée dans l’estuaire et le golfe du Saint-Laurent (2017–2021). Observatoire global du Saint-Laurent. [Jeu de données]Jobin, A., Marquis, G., Provencher-Nolet, L., Gabaj Castrillo. M. J., Trubiano C., Drouet, M., Eustache-Létourneau, D., Drejza, S. Fraser, C. Marie, G. et P. Bernatchez (2021) Cartographie des écosystèmes côtiers du Québec maritime — Rapport méthodologique. Chaire de recherche en géoscience côtière, Laboratoire de dynamique et de gestion intégrée des zones côtières, Université du Québec à Rimouski. Rapport remis au ministère de l’Environnement et de la Lutte contre les changements climatiques, septembre 2021, 98 p.