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We have found 35 datasets for the keyword " ciona intestinalis". You can continue exploring the search results in the list below.
Datasets: 106,103
Contributors: 42
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35 Datasets, Page 1 of 4
Vase tunicate (Ciona intestinalis) - Aquatic Invasive Species Program - Newfoundland and Labrador Region
AIS NL Biofouling Species Fisheries and Oceans Canada's (DFO) National Marine Biofouling Monitoring Program conducts annual field surveys to monitor the introduction, establishment, spread, species richness, and relative abundance of native and some non-native species in Newfoundland and Labrador (NL) Region since 2006. Standardized monitoring protocols employed by DFO's NL, Maritimes, Gulf, and Quebec regions include biofouling collector plates deployed from May to October at georeferenced intertidal and shallow subtidal sites, including public docks, and public and private marinas and nautical clubs. Initially, (2006-2017), the collectors consisted of three 10 cm by 10 cm PVC plates deployed in a vertical array and spaced approximately 40 cm apart, with the shallowest plate suspended at least 1 m below the surface to sample subtidal and shallow intertidal species (McKenzie et al 2016a). Three replicate arrays were deployed at least 5 m apart per site. Since 2018, collector networks have been modified to improve statistical replication, including up to 10 individual collectors deployed per site at 1 m depth and at least 5 m apart (as above) from May to October. Since 2006, seven invasive biofouling organisms have been detected in Newfoundland and Labrador harbours, marinas and coastal areas.Should be cited as follows: DFO Newfoundland and Labrador Region Aquatic Invasive Species Marine Biofouling Monitoring Program. Published March 2024. Coastal and Freshwater Ecology, Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John’s, Newfoundland and Labrador.Reference:TunicatesVase tunicate (Ciona intestinalis) 2012 The Vase tunicate, is a high impact solitary invader and was first detected by DFO in 2012 on the Burin Peninsula at Ship Cove and Little Bay, Placentia Bay. Various mitigation measures (McKenzie et al. 2016b) contained this invasive tunicate to a small area for six years within Placentia Bay. First detected in Fortune Bay as an established population in 2019, increasing reports of the Vase tunicate have been made along the south coast of Newfoundland. The data provided here indicates the detections of this AIS in coastal NL.From 2018-2022, the Coastal Environmental Baseline Program provided additional support to enhance sampling efforts in Placentia Bay.
Integrating Gut Microbiota and Population Genomics in White Hake (Urophycis tenuis): Supporting Data
PURPOSE:The purpose of this work was to determine (1) how the population genomic structure relates to gut microbiota composition of White Hake (Urophycis tenuis), and (2) whether microbiota community variation provides complementary insights into population structure of this species in eastern Canada.DESCRIPTION:Integrating host-associated microbiota with genomic approaches offers an opportunity to better understand the multiple biological dimensions shaping population structure in marine fishes. A clear understanding of population structure and dynamics is essential for informed fisheries management and conservation decisions; however, while genomic approaches have greatly improved our ability to delineate biological populations, they provide only a partial representation of biological structure, as patterns of differentiation reflect both historical divergence and contemporary ecological conditions. Host-associated microbiota can influence population-level ecological processes by contributing functional, potentially heritable variation that shapes host phenotype and fitness.In this study, we combined genotyping-by-sequencing with 16S rRNA gene amplicon sequencing to examine how population genomic structure relates to gut microbiota composition and to evaluate whether microbiota community variation provides complementary insights into population structure in White Hake (Urophycis tenuis) in eastern Canada. Genomic analyses identified two populations with greater spatial overlap than previously reported. Variation partitioning revealed that host genetics explained a negligible proportion of microbiota variation compared to environmental factors and fish length, suggesting that ontogenetic shifts in habitat use and resource acquisition influence gut microbiota composition. Several taxa were differentially abundant among fish length categories used as a proxy for diet, including taxa with chitin-degrading potential such as Photobacterium and Lachnospirales, which were enriched in smaller fish known to consume a crustacean-dominated diet. Together, these results indicate that gut microbiota composition in White Hake primarily reflects ecological and life-history processes rather than host population structure. PARAMETERS COLLECTED:Environmental parameters were also collected at most sampling sites, including depth, water temperature, oxygen and salinity levels.PHYSICAL SAMPLE DETAILS:Fin samples were collected to characterize the fish genotypes. Intestine (rectum) samples were collected to study fish gut microbiome.SAMPLING METHODS:In 2022 and 2023, White Hake were sampled during Fisheries and Oceans Canada (DFO) annual bottom trawl ecosystem monitoring surveys.USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.
Groundwater Flow, Groundwater Geoscience Program
Groundwater flow is the movement of water in an aquifer or hydrogeological unit. The dataset shows groundwater flow rate and direction in the hydrogeological unit. Groundwater flow is establish from piezometric surface map. The method used to create the dataset is described in the metadata associated with the dataset. The dataset represents a description of the flow, including rate in m/d, direction, date and source. Typically, the data provided will not be in the form of a shapefile with linked properties but in the form of an image that sketches the groundwater flow. The image could also represent a cross section of the hydrogeologic units showing the regional trends of the groundwater flow.
Belly River Structure
Belly River Structure
Fisheries monitoring and biological data of the Yellowknife River Cisco (Coregonus artedi) population, 1999–2020
PURPOSE:"Biological, relative abundance, and environmental data have been collected from the Yellowknife River Cisco population that can be used to inform fisheries management decision-making. Under the conditions of a commercial licence issued under the New Emerging Fisheries Policy, licence holders are required to record catch and biological information to support the assessment of the feasibility and sustainability of the fishery over time, and potential advancement in the stages of a developing fishery. In addition to the information collected from the commercial harvest (fishery-dependent), a fishery-independent sampling and snorkel survey program was conducted with the objective of collecting additional biological, observational, and environmental data during the fall spawning run.The objective of this report is to compile available data from fishery-dependent and fishery-independent sampling of adfluvial Yellowknife River Cisco during fall, 1998-2020*, specifically by:• Summarizing commercial fishery quotas and reported harvest;• Characterizing population demographics and examining for trends over time;• Summarizing metrics of relative abundance (i.e., catch-per-unit-effort data and snorkel survey observations) and examining for trends over time; and• Determining if there were any associations between relative abundance of Cisco and river discharge and temperature. *A commercial harvest occurred in 1998, although no biological or catch-effort records were located. In addition, in response to concerns about the status of the population, the fishery was put on hold 2006–2009 to allow for a population assessment (no data during that time). DESCRIPTION:Cisco (Coregonus artedi) from the Yellowknife River, Northwest Territories, are an important fishery resource for nearby communities. Biological, catch-effort, and environmental data were collected from the Yellowknife River (Tartan Rapids and Bluefish areas) during their fall spawning run from Great Slave Lake. Data from the commercial harvest (fishery-dependent; 1998–2020) and supplementary monitoring (fishery-independent; 2013–2020) of these adfluvial Cisco were compiled to summarize commercial fishery quotas and reported harvest, characterize population demographics and catch-effort over time, and assess potential associations between relative abundance and seasonal river characteristics. A single commercial fishing licence for Cisco was issued on an annual basis each fall for 1,000 kg from 1998–2002, 2,000 kg from 2004–2005, 1,000 kg from 2010–2018, and 1,500 kg from 2019–2020. Cisco ranged from 102–239 mm fork length, 10.0–139.6 g round weight, and 1 and 9 years of age, with the majority of fish (>99%) being sexually mature. The demographics (length, weight, age) of the spawning population collected from the commercial fishery remained relatively stable between 1999 and 2020. Catch-effort of the commercial fishery varied widely among years without trend, although this was not standardized to the number of individuals/nets used to capture the fish. The biological, catch-effort, and environmental data collected from the Yellowknife River spawning population of Cisco serve as a benchmark for their ongoing assessment and management.
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker COI
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b
BC Schools - K-12 with Francophone Indicators
This dataset is comprised of locations and current information for all schools for Kindergarten to Grade 12 in British Columbia. Indicators are included for schools that offer French programs including: Core French, Early French Immersion, Late French Immersion and Francophone Program.
Aquifers with Water Allocation Notations
This dataset displays aquifers with water allocation notations on them. This dataset is updated daily.
Drainage superintendents
This dataset contains a list of drainage superintendents who are appointed by the local municipality to manage drains constructed under the [Drainage Act, 1990](https://www.ontario.ca/laws/statute/90d17). Drainage superintendents are businesses or individuals that represent the local municipality to assist landowners to resolve their drainage concerns using the Ontario Drainage Act, 1990. This list is maintained by the Ministry of Agriculture, Food and Agribusiness (OMAFA) and includes municipality names, addresses telephone numbers, and superintendent contact information. This list is updated annually or as required throughout the year. More information about the work of drainage superintendents can be found at [Drainage Superintendents Association of Ontario (DSAO)](https://www.dsao.net/).
Archer Fiord Phytoplankton Data 2023
PURPOSE:This Archer fiord data is associated with a larger program ArcticCORE, which was created to fulfill knowledge gaps and develop long term protection in the extremely remote Tuvaijuittuq region. The main objectives of this expedition were to improve our comprehension of the key drivers for productive capacity, diversity and ecosystem structure in areas connected to Baffin Bay and Tuvaijuittuq, including Archer fiord.DESCRIPTION:ArcticCORE is a 5-year broader program aiming to characterize Tuvaijuittuq’s unique ecosystem and its influence and connectivity with the adjacent ecosystems to inform sustainable management and conservation initiatives in Tuvaijuittuq and the eastern Arctic. In an Arctic Ocean with rapidly declining sea ice, Tuvaijuittuq area retains the oldest and thickest sea ice, and can act as a refuge for ice-dependent species. This program aims to characterize the Arctic marine ecosystem and establish baseline measurements for future comparisons in the region. From 2023, water collection was carried out at four stations throughout Archer Fiord and analyzed for primary productivity, chlorophyll a, phytoplankton flow cytometry and phytoplankton taxonomy down to the lowest identifiable level. These data will contribute to a better understanding of the key drivers for productive capacity, diversity and ecosystem structure in Archer fiord. Characterization of these upstream areas are relevant for an ecosystem-based approach to fisheries management in Baffin Bay, a priority for DFO and an intrinsic part of mandated activities, as they influence the ecosystem and fisheries resources downstream.
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