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We have found 38 datasets for the keyword " coi". You can continue exploring the search results in the list below.
Datasets: 106,057
Contributors: 42
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38 Datasets, Page 1 of 4
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker COI
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b
MBON Pole to Pole: Rocky shore biodiversity of Musquash Harbour, Passamaquoddy Bay and Mispec Bay
The Marine Biodiversity Observation Network Pole to Pole (MBON P2P) effort seeks to develop a framework for the collection, use and sharing of marine biodiversity data in a coordinated, standardized manner leveraging on existing infrastructure managed by the Global Ocean Observing System (GOOS; IOC-UNESCO), the GEO Biodiversity Observation Network (GEO BON), and the Ocean Biogeographic Information System (OBIS). The MBON Pole to Pole aims to become a key resource for decision-making and management of living resource across countries in the Americas for reporting requirements under the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES), Aichi Targets of the Convention of Biological Diversity (CBD), and the UN 2030 Agenda for Sustainable Development Goals (SDGs).This collection corresponds to the species registered on rocky shores of the Musquash Harbour, Passamaquoddy Bay and Mispec Bay, New Brunswick, Canada, using the MBON P2P sampling protocol for rocky shores, with funding from the Government of Canada's Coastal Environmental Baseline Program.Citation: Reinhart B, Cooper A, Nason R, Jonah L (2025). MBON POLE TO POLE: ROCKY SHORE BIODIVERSITY OF MUSQUASH HARBOUR, PASSAMAQUODDY BAY AND MISPEC BAY. Version 1.7. Caribbean OBIS Node. Samplingevent dataset. https://ipt.iobis.org/mbon/resource?r=rockyshoresbayoffundynb&v=1.7
MBON Pole to Pole: Sandy beach biodiversity of southwest New Brunswick, Canada
The Marine Biodiversity Observation Network Pole to Pole (MBON P2P) effort seeks to develop a framework for the collection, use and sharing of marine biodiversity data in a coordinated, standardized manner leveraging on existing infrastructure managed by the Global Ocean Observing System (GOOS; IOC-UNESCO), the GEO Biodiversity Observation Network (GEO BON), and the Ocean Biogeographic Information System (OBIS). The MBON Pole to Pole aims to become a key resource for decision-making and management of living resource across countries in the Americas for reporting requirements under the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES), Aichi Targets of the Convention of Biological Diversity (CBD), and the UN 2030 Agenda for Sustainable Development Goals (SDGs).This collection corresponds to the species registered on sandy beaches of the Musquash Harbour, Mispec Bay, and New River Beach, New Brunswick, Canada, using the MBON P2P sampling protocol for sandy beaches, with funding from the Government of Canada's Coastal Environmental Baseline Program.Citation: Reinhart B, Jonah L (2025). MBON POLE TO POLE: SANDY BEACH BIODIVERSITY OF SOUTHWEST NEW BRUNSWICK, CANADA. Version 1.7. Caribbean OBIS Node. Samplingevent dataset. https://ipt.iobis.org/mbon/resource?r=sandybeachesbayoffundynb&v=1.7
Coho Salmon (Oncorhynchus kisutch) Conservation Units, Sites & Status
A Conservation Unit (CU) is a group of wild Pacific salmon sufficiently isolated from other groups that, if extirpated, is very unlikely to recolonize naturally within an acceptable timeframe, such as a human lifetime or a specified number of salmon generations.Holtby and Ciruna (2007) provided a framework for aggregating the five species of salmon (genus Oncorhynchus) found on Canada’s Pacific coast into species-specific CUs based on three primary characteristics: ecotypology, life history and genetics. The first stage in the description of the Conservation Units is based solely on ecology. The ecotypologies used in this framework include a combined characterization of both freshwater and near-shore marine environments, and is termed “joint adaptive zone”. The second stage of the description involves the use of life history, molecular genetics, and further ecological characterizations to group and partition the first stage units into the final Conservation Units. The result is CUs that are described through the joint application of all three axes. It is important to note that CUs are distinct from other aggregates of Pacific salmon, such as designatable units (DUs) under the Species at Risk Act or management units (MUs).CU Counting Sites:Salmon spawner enumeration data in the Pacific Region is stored and managed in the New Salmon Escapement Database (NuSEDS). The term “escapement” is used to refer to the group of mature salmon that have ‘escaped’ from various sources of exploitation, and returned to freshwater to spawn and reproduce. This data is assigned to a “Counting Site”, which may be a complete watercourse with a marine terminus, a tributary to a larger watercourse, or a defined reach within a watercourse that may or may not encompass the entire population but represents an index of the abundance of that population. CU Status:CUs form the basic unit for assessment under Canada’s Policy for the Conservation of Wild Salmon Policy (WSP) (DFO 2005). The biological status of a CU is evaluated using a number of metrics (Holt et al. 2009; Holt 2009), which indicate a WSP status zone: Red (poor status), Amber (marginal status), or Green (healthy status). A final step then incorporates all metric and status-related information into a final integrated status for each CU, along with expert commentary to support the final status determination (e.g., DFO 2012; DFO 2016). This information is used as inputs to fisheries management processes to help prioritize assessment activities and management actions.Note: CU boundaries were reviewed in 2020-2021 and have been updated from the BC Freshwater Atlas 1:50,000 scale to the BC Freshwater Atlas 1:20,000 scale. The CU boundaries were last updated in March 2023. Please be aware that CUs may be reviewed and are subject to change without notice.Please refer to Conservation Unit Review Requests-Form and Summary for a list of CU review requests that are ongoing or have been finalized.
OIC - Oil and Gas Act
Orders in Council (OIC) are regulations or legislative orders in relation to and authorized by an existing Act. This table identifies Yukon lands withdrawn from disposal, usually by Territorial Order in Council. In Corporate Spatial Warehouse (CSW) data is split out into spatial views by Act under which orders are authorized. The tables are comprehensive and include both active and expired orders. Spatial views show only the active data.In this table and spatial views, Regulations by Order in Council (OIC) are spatially represented to provide clarity regarding Yukon lands withdrawn from disposal. Spatial data is viewed by the Act under which the order is authorized. Not all orders are for withdrawal, different levels of withdrawal are common and not detailed in GIS attributes. It is important to read OIC documents for specific details (https://legislation.yukon.ca/legislation/page_a.html).Distributed from [GeoYukon](https://yukon.ca/geoyukon) by the [Government of Yukon](https://yukon.ca/maps). Discover more digital map data and interactive maps from Yukon's digital map data collection.For more information: [geomatics.help@yukon.ca](mailto:geomatics.help@yukon.ca)
Graphical matrix evaluation units - Saint-Hyacinthe
Polygons of evaluation units of the graphic matrix.**Collection context** Update process in collaboration with the evaluation department.**Collection method** Computer-aided mapping.**Attributes*** `ID` (`integer`): Identifier* `ADM01A` (`varchar`): Municipality code* `SI0318A` (`smalldatetime`): Registration date* `SI0317C` (`varchar`): Registration* `SI0528C` (`varchar`): Neighborhood unit* `DATE_CREATION` (`smalldatetime`): Created on* `DATE_MODIFICATION` (`smalldatetime`): Modified on* `USER_MODIFICATION` (`varchar`): Modified by* `X_FIC_JOINT` (`varchar`): Attached file* `ID_OLD` (`varchar`): Old idFor more information, consult the metadata on the Isogeo catalog (OpenCatalog link).**This third party metadata element was translated using an automated translation tool (Amazon Translate).**
OIC - Yukon Act
Orders in Council (OIC) are regulations or legislative orders in relation to and authorized by an existing Act. This table identifies Yukon lands withdrawn from disposal, usually by Territorial Order in Council. In Corporate Spatial Warehouse (CSW) data is split out into spatial views by Act under which orders are authorized. The tables are comprehensive and include both active and expired orders. Spatial views show only the active data.In this table and spatial views, Regulations by Order in Council (OIC) are spatially represented to provide clarity regarding Yukon lands withdrawn from disposal. Spatial data is viewed by the Act under which the order is authorized. Not all orders are for withdrawal, different levels of withdrawal are common and not detailed in GIS attributes. It is important to read OIC documents for specific details (https://legislation.yukon.ca/legislation/page_a.html).Distributed from [GeoYukon](https://yukon.ca/geoyukon) by the [Government of Yukon](https://yukon.ca/maps). Discover more digital map data and interactive maps from Yukon's digital map data collection.For more information: [geomatics.help@yukon.ca](mailto:geomatics.help@yukon.ca)
Wildlife Management Unit
The Wildlife Management Unit (WMU) dataset is comprised of all the polygons that represent the Wildlife Management Units in Alberta. WMU is an area of wildlife managed under Wildlife Act, Alberta Regulation 143/79.
OIC - Wildlife Act
Orders in Council (OIC) are regulations or legislative orders in relation to and authorized by an existing Act. This table identifies Yukon lands withdrawn from disposal, usually by Territorial Order in Council. In Corporate Spatial Warehouse (CSW) data is split out into spatial views by Act under which orders are authorized. The tables are comprehensive and include both active and expired orders. Spatial views show only the active data.In this table and spatial views, Regulations by Order in Council (OIC) are spatially represented to provide clarity regarding Yukon lands withdrawn from disposal. Spatial data is viewed by the Act under which the order is authorized. Not all orders are for withdrawal, different levels of withdrawal are common and not detailed in GIS attributes. It is important to read OIC documents for specific details ( [https://legislation.yukon.ca/legislation/page_a.html](https://legislation.yukon.ca:443/legislation/page_a.html) ).Distributed from [GeoYukon](https://yukon.ca/geoyukon) by the [Government of Yukon](https://yukon.ca/maps) . Discover more digital map data and interactive maps from Yukon's digital map data collection.For more information: [geomatics.help@yukon.ca](mailto:geomatics.help@yukon.ca)
Evaluation unit registration point - Saint-Hyacinthe
Point layer of the registration points (centroids) of the evaluation units of the graphic matrix.**Collection context** Update provided by the evaluator or evaluation department.**Collection method** Computer-aided mapping.**Attributes*** `ID` (`integer`): Identifier* `ADM01A` (`varchar`): Municipality code* `SI0317A` (`smalldatetime`): Registration date* `SI0317B` (`integer`): Representation scale* `SI0317C` (`varchar`): Registration* `SI0317D` (`varchar`): Location* `SI0102C` (`varchar`): Section* `SI0103C` (`varchar`): Division* `UNIT_V` (`varchar`): Neighborhood unit* `NOTES` (`varchar`): Notes* `DATE_CREATION` (`smalldatetime`): Creation date* `DATE_MODIFICATION` (`smalldatetime`): Date of modification* `USER_MODIFICATION` (`varchar`): Modified byFor more information, consult the metadata on the Isogeo catalog (OpenCatalog link).**This third party metadata element was translated using an automated translation tool (Amazon Translate).**
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