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We have found 687 datasets for the keyword " microsatellites". You can continue exploring the search results in the list below.
Datasets: 106,579
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687 Datasets, Page 1 of 69
Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus
Effective conservation planning relies on understanding population connectivity which can be informed by genomic data. This is particularly important for sessile species like the horse mussel (Modiolus modiolus), a key habitat-forming species and conservation priority in Atlantic Canada), yet little genomic information is available to describe horse mussel connectivity patterns. We used more than 8000 restriction-site associated DNA sequencing-derived single nucleotide polymorphisms and a panel of 8 microsatellites to examine genomic connectivity among horse mussel populations in the Bay of Fundy, along the Scotian Shelf, and in the broader northwestern Atlantic extending to Newfoundland. Despite phenotypic differences between sampling locations, we found an overall lack of genetic diversity and population structure in horse mussels in the Northwest Atlantic Ocean. All sampled locations had low heterozygosity, very low FST, elevated inbreeding coefficients, and deviated from Hardy-Weinberg Equilibrium, highlighting generally low genetic diversity across all metrics. Principal components analysis, Admixture analysis, pairwise FST calculations, and analysis of outlier loci (potentially under selection) all showed no independent genomic clusters within the data, and an analysis of molecular variance showed that less than 1% of the variation within the SNP dataset was found between sampling locations. Our results suggest that connectivity is high among horse mussel populations in the Northwest Atlantic, and coupled with large effective population sizes, this has resulted in minimal genomic divergence across the region. These results can inform conservation design considerations in the Bay of Fundy and support further integration into the broader regional conservation network.Cite this data as: Van Wyngaarden, Mallory et al. (2024). Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus. Published: May 2025. Coastal Ecosystem Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth, NS.
Taxonomic and Genetic Diversity of Decapods in Northeast Pacific, Canadian Arctic and Northwest Atlantic
An exploratory project on the taxonomic and genetic diversity of decapods in three ocean subregions (Northeast Pacific, Canadian Arctic, and Northwest Atlantic), which were sampled in 2022, was undertaken by the Arctic Working Group under the Canada-U.S. Fisheries and Climate Collaboration between Fisheries and Oceans Canada (DFO) and the National Marine Fisheries Service (NMFS) of the National Oceanic and Atmospheric Administration (NOAA). This collaboration framework aims to pool Canadian and U.S. data to explore the impacts of broad-scale climate change on marine biodiversity. In early summer 2022, a sampling protocol with the selection of targeted decapods was provided to DFO and NOAA collaborators. Targeted genera were collected from a total of 10 research programs across three ocean subregions and four marine regions. The Northeast Pacific samples were collected in the Bering Sea during the Northern Bering Sea Ecosystem and Surface Trawl Survey, and the Eastern and Northern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Fauna onboard the F/V Northwest Explorer, F/V Alaska Knight and F/V Vesteraalen. In the Western Canadian Arctic (mainly from Beaufort Sea and Amundsen Gulf), specimens were collected during DFO’s Canadian Beaufort Sea – Marine Ecosystem Assessment (CBS-MEA) survey onboard the F/V Frosti. In Eastern Canadian Arctic (mainly from Baffin Bay and Davis Strait), specimens were collected during DFO’s Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) survey onboard the CCGS Amundsen and DFO’s North Atlantic Fisheries Organization (NAFO) Subarea 0B survey onboard the R/V Tarajoq. In the Estuary and Gulf of St. Lawrence (EGSL), specimens were collected from coastal surveys (scallops, sea cucumber, snow crab, and whelk surveys) onboard the CCGS Leim and offshore during the Ecosystemic Survey onboard the CCGS Teleost. Decapods were collected from various sampling gears (benthic beam trawl, modified Atlantic Western IIA otter trawl, Bacalao trawl, shrimp trawl, Digby scallop dredge, or modified sea cucumber dredge) and identified to the lowest possible taxonomic level and photographed, when possible. All specimens were frozen at sea (n = 995). In the lab, the identifications were validated or refined with the photos and the frozen specimens. DNA was extracted for 87 specimens and a section of COI gene was amplified in order to be sequenced using Sanger method. Sequences were compared with existing data using The Basic Local Alignment Search Tool (BLAST) in the National Center for Bio-technology Information Nucleotide database (NCBI-nt, including the GenBank database) to compare scientific names, where available.The present dataset includes 391 decapod species occurrences. DNA was extracted for a subset of 87 specimens (COI gene); sequences are publicly available on BOLD data portal under project code DDAO (see supporting document "citations_references.csv" for more information).The data are presented in Darwin Core format and are separated in three files:The "Activité_décapodes_DDAO_decapods_event_en" file contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "Occurrence_décapodes_DDAO_decapods_en" file contains the taxonomic occurrences.The "ADN_décapodes_DDAO_decapods_DNA_en" file contains the DNA derived data.For further details, please refer to the technical report available in the supporting document named "citations_references.csv". USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.
California Sea Lion Haulout Counts in British Columbia
The United States population of California Sea Lions (Zalophus californianus) range from southeast Alaska to the Pacific coast of central Mexico. While this population does not breed in Canada, some sub-adult and adult males migrate northwards to British Columbia (BC) during the non-breeding season with an arrival in August–October and a departure in April–May. The population in coastal BC was assessed in 1985 and again in 2023 from dedicated over-winter aerial surveys. The most recent assessment used counts from 2020–2021surveys that were restricted to southern BC as few animals have been documented further north. Additional observations of California Sea Lions were collected while surveying sites for Steller Sea Lions. These opportunistic counts increased from approximately 1,000 animals in the mid-2000s to several thousand individuals in more recent years. Historically occupied sea lion rookeries and haul-out sites were surveyed with nearby areas monitored for potential shifts in distribution. This dataset contains counts that have been collected from sightings of individuals from 1971 through 2021and replaces a previous dataset limited to the 2016/2017 survey season.
Canada's Evolving Geographical Names
This dataset is a collaborative project by Natural Resources Canada and the federal, provincial and territorial members of the Geographical Names Board of Canada, illustrating a curated selection of official geographical names in Canada that have changed over time. The selection comes from the Canadian Geographical Names Database, displaying additional information including the previous name(s) of each feature, the year and the reason why the names changed along with a short history of each name change.
Odd Year Pink Salmon (Oncorhynchus gorbuscha) Conservation Units, Sites & Status
A Conservation Unit (CU) is a group of wild Pacific salmon sufficiently isolated from other groups that, if extirpated, is very unlikely to recolonize naturally within an acceptable timeframe, such as a human lifetime or a specified number of salmon generations.Holtby and Ciruna (2007) provided a framework for aggregating the five species of salmon (genus Oncorhynchus) found on Canada’s Pacific coast into species-specific CUs based on three primary characteristics: ecotypology, life history and genetics. The first stage in the description of the Conservation Units is based solely on ecology. The ecotypologies used in this framework include a combined characterization of both freshwater and near-shore marine environments, and is termed “joint adaptive zone”. The second stage of the description involves the use of life history, molecular genetics, and further ecological characterizations to group and partition the first stage units into the final Conservation Units. The result is CUs that are described through the joint application of all three axes. It is important to note that CUs are distinct from other aggregates of Pacific salmon, such as designatable units (DUs) under the Species at Risk Act or management units (MUs).CU Counting Sites:Salmon spawner enumeration data in the Pacific Region is stored and managed in the New Salmon Escapement Database (NuSEDS). The term “escapement” is used to refer to the group of mature salmon that have ‘escaped’ from various sources of exploitation, and returned to freshwater to spawn and reproduce. This data is assigned to a “Counting Site”, which may be a complete watercourse with a marine terminus, a tributary to a larger watercourse, or a defined reach within a watercourse that may or may not encompass the entire population but represents an index of the abundance of that population. CU Status:CUs form the basic unit for assessment under Canada’s Policy for the Conservation of Wild Salmon Policy (WSP) (DFO 2005). The biological status of a CU is evaluated using a number of metrics (Holt et al. 2009; Holt 2009), which indicate a WSP status zone: Red (poor status), Amber (marginal status), or Green (healthy status). A final step then incorporates all metric and status-related information into a final integrated status for each CU, along with expert commentary to support the final status determination (e.g., DFO 2012; DFO 2016). This information is used as inputs to fisheries management processes to help prioritize assessment activities and management actions.Note: CU boundaries were reviewed in 2020-2021 and have been updated from the BC Freshwater Atlas 1:50,000 scale to the BC Freshwater Atlas 1:20,000 scale. The CU boundaries were last updated in March 2023. Please be aware that CUs may be reviewed and are subject to change without notice. Please refer to Conservation Unit Review Requests-Form and Summary for a list of CU review requests that are ongoing or have been finalized.
Pacific Salmon Designatable Units
The dataset consists of maps detailing the boundaries of the designatable units for conservation considerations as defined by the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) for species of Pacific Salmon in British Columbia and the Yukon. Designatable units represent geographical areas that support groups of individuals with a unique genetic heritage makes them discrete and evolutionarily significant units of the taxonomic species, where “significant” means that the unit is important to the evolutionary legacy of the species as a whole and if lost is unlikely to be replaced through natural dispersion.
Specialized Municipality
The Specialized Municipality dataset is comprised of all the polygons that represent Specialized Municipalities in Alberta. Specialized Municipality is a type of municipality which does not meet the needs of the residents of a proposed municipality such as City, Municipal District, Town or Village. but formed to provide for a form of local government that will provide for the orderly development of the municipality or by any other reason that is appropriate in the circumstances. Specialized municipalities are unique municipal structures that can be formed without resorting to special Acts of the legislature. Often, specialized municipalities allow urban and rural communities to coexist in a single municipal government.
British Columbia Seabird Colony Inventory
This data set includes the locations of all known seabird colonies along the coast of British Columbia, and provides a compilation of the population estimates of seabirds breeding at those colonies since 1980, and historical estimates prior to 1980 for some colonies. It does not include an estimate of the numbers of juvenile birds or non-breeders in the population.The rationale for developing this inventory was the recognized need for a product that could assist with: coastal zone and conservation area planning; emergency response to environmental emergencies and identifying areas of potential interactions between seabirds and anthropogenic activities. In addition, the data used to develop the document provides a baseline to compare with future seabird population estimates in order to measure the impacts of shifts in composition, abundance and/or distribution of prey, and climatic and oceanographic changes. The database is not a substitute for on-site surveys usually required for environmental assessment.Here we present data on the breeding colony population estimates of the 17 species of seabirds (including two storm petrels, three cormorants, one gull, and eight alcids) and one shorebird (Black Oystercatcher Haematopus bachmani) that breed on the coast of British Columbia. Over 5.5 million colonial birds are currently estimated to nest at 649 sites (Rodway et al. 2024). Five species (Cassin's Auklets Ptychoramphus aleuticus, Fork-tailed Storm-petrels (Hydrobates fucatus), Rhinoceros Auklets Cerorhinca monocerata, Ancient Murrelets Synthliboramphus antiquus, and Leach's Storm-petrels (Hydrobates leucorhous), comprise the vast majority of that population, although Black Oystercatchers (Haematopus bachmani), Pigeon Guillemots (Cepphus columba), and Glaucous-winged Gulls (Larus glaucescens), nest at the most sites. Marbled Murrelets (Brachyramphus marmoratus), which nest on the mossy limbs of mature and old-growth trees within the coastal forests, are not included in this database, due to their dispersed nesting habit.The population estimates presented in this database are compiled from the results of several surveys. Many of the seabird breeding colonies in British Columbia have been known for more than 50 years, but because of the remoteness of the sites, visits to them have been rare. The majority of the data are the results of comprehensive inventories of colonial nesting seabirds along the British Columbia coastline conducted between 1974 and 1977 by the British Columbia Provincial Museum (BCPM; now Royal British Columbia Museum ) and between 1980 and 1989 by the Canadian Wildlife Service of Environment and Climate Change Canada (CWS). The goal of the BCPM surveys was to explore the entire BC coast to identify seabird nesting sites. Reliable, quantitative data were gathered on the breeding populations of all surface-nesting seabird species and rough estimates of population sizes were made for burrow-nesting species. The goal of the CWS survey program was to establish baseline estimates of breeding populations of burrow-nesting species in BC using standardized survey techniques to allow future comparisons and monitoring of those populations. During the 1980s, repeat surveys of surface-nesting species were also conducted by CWS in most regions of the BC coast. A few colonies on small remote islands were not visited during those surveys. Therefore, for some colonies the most current population estimates are from the first complete survey of the BC coastline, carried out by the Royal British Columbia Museum in the mid 1970’s.Since 1989, surveys have been conducted by CWS on some alcid, cormorant and gull colonies along the BC coast, and results have been included in the dataset (data entry ongoing). As well as data from CWS surveys, we have attempted to obtain recent data from all other sources including Parks Canada, Transport Canada, the BC Ministry of Forests, Lands, Natural Resource Operations and Rural Development, the City of Vancouver, the Bamfield Marine Station, and the Laskeek Bay Conservation Society. Since 2000, inventories of nesting BlackOystercatchers have been conducted in some regions of the coast by Parks Canada and partners (Gulf Islands National Park Reserve, Pacific Rim National Park Reserve, and Gwaii Haanas National Park Reserve) and results have been included in the dataset (data entry ongoing). A long time series of nesting Black Oystercatcher data collected by Laskeek Bay Conservation Society in the Laskeek Bay area of the East Coast of Moresby Island has also been included in this dataset.
Forest genetics zone
This spatial data identifies breeding zones used by forest managers and forest genetic associations to manage provincial forest genetic assets. The data: * shows the boundaries of breeding zones * identifies the primary or target species within each zone Species are associated with certain breeding programs, seed orchards and progeny (descendant) testing installations.
Village
The Village dataset is comprised of all the polygons that represent Villages in Alberta. Village is a municipality type defined under the authority of the Municipal Government Act. The formation of a Village can occur when a majority of the buildings are on parcels of land smaller than 1850 square meters and there is a population of 300 or more.
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