The data in this dataset represent an amalgamation of sea turtle sighting, stranding, and entrapment events, mainly near Newfoundland and Labrador (NL), Canada.This document summarises the detection events data for Leatherback (Dermochelys coriacea), Loggerhead (Caretta caretta), and Green (Chelonia mydas) Turtles that has been collected from opportunistic and systematic survey sources, plus stranding and entrapment records, in the waters of NL from 1946 to 2023. To a much lesser extent there are also detection records for the southern Gulf of St. Lawrence. Scotian Shelf, and northeastern U.S. waters.These detection records are mostly derived from opportunistic reports, so there are rarely data for a report that includes measures of the observer effort expended to make the detection, and rarely associated imagery. During DFO aerial surveys there are measures of effort in most cases, enabling the turtle sightings reports to be used in habitat modelling (e.g., Mosnier et al. 2018).Most of the information variables (such as “Date”, “Latitude”, “Longitude”, “Number of Animals”) have been obtained from the detection report. In some cases data for variables such as “Location Reliability”, “ID Reliability”, “Platform”, and “Strand or Entrapment Outcome” were derived from interpretation of the comments associated with the report, if available. For description of the variables in the dataset see the Data Dictionary.References:Mosnier, A., Gosselin, J.-F., Lawson, J., Plourde, S., and Lesage, V. 2018. Predicting seasonal occurrence of leatherback turtles (Dermochelys coriacea) in eastern Canadian waters from turtle and sunfish (Mola mola) sighting data and habitat characteristics. Can. J. Zool. 97: 464-478. https://doi.org/10.1139/cjz-2018-0167

Spiny dogfish (Squlaus acanthias), is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Historical finds of Coleophora laricella

The white shark (Carcharodon carcharias), is a species found in Atlantic Canadian waters which is encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to white sharks from 2016 to the present to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada and the United States (Cape Cod and South Carolina) on scientific charters, typically in summer. Tag models deployed included: Mk10 (N=1), and MiniPAT (N=29) and 22 of 27 tags reported with 3 still at liberty. One individual shark returned to the location of tagging 1 year later and the physical tag was recovered. Another tag was recovered 5 years after deployment. White sharks tagged ranged in size from 259 cm to 459 cm Total Length (curved) estimated; 15 were female, 13 were male, and 2 were of unknown sex. Time at liberty ranged from 48 – 377 days and to date, only 3 tags remained on the shark for the programmed duration. Tagging of white sharks is an ongoing study and data will be updated here when it becomes available. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

PURPOSE:To characterize food webs of lake fish communities using stable isotopes, gut content morphology and DNA.DESCRIPTION:Data sets containing fish species caught in Miramichi Lake, McKiel Lake and Nashwaak Lake. PARAMETERS COLLECTED:Species counts (ecological); points (spatial)USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

The basking shark (Cetorhinus maximus), is a species found in Atlantic Canadian waters which is mostly encountered “basking” on the surface waters and sometimes caught accidentally in commercial fisheries. One Pop-up Satellite Archival Tag (PSAT Mk10) from Wildlife Computers was applied to a single female basking shark in September 2008 on a commercial vessel to collect data on depth (pressure), temperature and ambient light level (for position estimation). The basking shark was 610 cm Total Length (curved). The tag released on the pre-programmed date 125 days after deployment. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployment can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Marine classification schemes based on abiotic surrogates often inform regional marine conservation planning in lieu of detailed biological data. However, theses chemes may poorly represent ecologically relevant biological patterns required for effective design and management strategies. We used a community-level modeling approach to characterize and delineate representative mesoscale (tens to thousands of kilometers) assemblages of demersal fish and benthic invertebrates in the North-west Atlantic. Hierarchical clustering of species occurrence data from four regional annual multispecies trawl surveys revealed three to six groupings (predominant assemblage types) in each survey region, broadly associated with geomorphic and oceanographic features. Indicator analyses identified 3–34 emblematic taxa of each assemblage type. Random forest classifications accurately predicted assemblage dis-tributions from environmental covariates (AUC > 0.95) and identified thermal limits (annual minimum and maximum bottom temperatures) as important pre-dictors of distribution in each region. Using forecasted oceanographic conditions for the year 2075 and a regional classification model, we projected assemblage dis-tributions in the southernmost bioregion (Scotian Shelf-Bay of Fundy) under ahigh emissions climate scenario (RCP 8.5). Range expansions to the north eastare projected for assemblages associated with warmer and shallower waters of the Western Scotian Shelf over the 21st century as thermal habitat on the rela-tively cooler Eastern Scotian Shelf becomes more favorable. Community-level modeling provides a biotic-informed approach for identifying broadscale ecolog-ical structure required for the design and management of ecologically coherent, representative, well-connected networks of Marine Protected Areas. When com-bined with oceanographic forecasts, this modeling approach provides a spatial tool for assessing sensitivity and resilience to climate change, which can improve conservation planning, monitoring, and adaptive management.Cite this data as: O'Brien, J.M., Stanley, R.R.E., Jeffery, N.W., Heaslip, S.W., DiBacco, C., and Wang, Z. Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic.Published: December 2024. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS.https://open.canada.ca/data/en/dataset/14d55ea5-b17d-478c-b9ee-6a7c04439d2b

The greenland shark (Somniosus microcephalus), is a species found in Atlantic Canadian waters which is occasionally encountered in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to greenland sharks from 2006 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial vessels throughout the year and in Cumberland Sound (Pangirtung) on a scientific expedition in April 2008. A variety of tag models were deployed: PAT 4 (n=1) and Mk10 (N=15) and 14 of 16 tags reported. Greenland sharks tagged ranged in size from 250 cm to 549 cm Total Length (curved); 3 were female, 9 were male, and 4 were of unknown sex. Time at liberty ranged from 48 – 350 days and 9 tags remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

An exploratory fishery was carried out in the Mackenzie River Delta between 1989 and 1993 at the request of the Inuvik Hunters and Trappers Committee to assess the commercial fishery potential in this area. Data collected during this exploratory fishery was used in two technical reports. Broad whitefish were the target species of this fishery (DFO Technical Report 2180), however other species such as northern pike, inconnu, and lake whitefish were also harvested (DFO Technical Report 2330).Biological data from broad whitefish (fork length, age, gonadosomatic index and instantaneous mortality) were analyzed to assess the impact of an exploratory fishery in the Mackenzie River Delta. The data were collected using variable mesh experimental gill nets and commercial harvesters' 139 mm (5.5”) mesh gill nets. The data suggest that the broad whitefish population might be separated, with larger mature spawners gathering in the main channels prior to spawning and smaller, immature or resting fish staying in side channels away from strong currents. From this analysis we conclude that the size and structure of the broad whitefish population(s) found in this area are stable at the current level of total harvest (commercial and subsistence combined) There may be room for increased harvests but to what level is uncertain.Biological data from northern pike, inconnu, and lake whitefish were analyzed to assess the impact of the fishery on population abundance and structure. All three by catch species support subsistence fisheries in the Mackenzie Delta. lnconnu and lake whitefish migrate substantial distances, crossing land claim borders and are likely fished by a variety of user groups. Northern pike, on the other hand tend to be non-migratory with localized populations that are mainly fished by people living in the near vicinity. A concern was that commercial fishing pressure might reduce the numbers of fish available to subsistence users. Based on trends in size and age frequency, age at maturity, sex ratio, growth rates, and mortality rates, we conclude that inconnu and lake whitefish populations in the Mackenzie Delta have remained healthy and stable at the current harvest levels, however northern pike populations showed a decrease in the proportion of older fish, possibly indicating over-fishing of local stocks. lnconnu and lake whitefish may be able to withstand increased harvest, but to what extent is unknown, given that little reliable information is available on subsistence harvest levels in this region. Increasing harvest levels of pike may be risky and we suggest that a reduction of current commercial harvest quotas be considered.