Monitoring of Unit 2 redfish by Fisheries and Oceans Canada (DFO) ceased in 2002. Since then, the Atlantic Groundfish Council (AGC, formerly the Groundfish Enterprise Allocation Council [GEAC]) has funded surveys approximately every two years in the area, in collaboration with DFO. Over the years, various vessels and gear types have been used. In 2024, a comparative survey was conducted using the CCGS John Cabot and a fishing industry vessel (the Léry Charles) to develop conversion factors that allow data from the 2020, 2022, and 2024 Unit 2 redfish surveys to be standardized to CCGS John Cabot equivalents. The survey covered the waters off southwestern Newfoundland and eastern Cape Breton, corresponding to redfish management Unit 2, which includes NAFO subdivisions 3Pn, 3Ps, 4Vn, 4Vs, and 4W. Here, data collected aboard the CCGS John Cabot are presented. Objectives• Assess the abundance and condition of groundfish and invertebrates• Assess environmental conditions• Inventory the biodiversity of benthic and demersal megafauna• Monitor the pelagic ecosystem• Collect samples for various research projectsData The CCGS John Cabot employed a four-sided modified Campelen 1800 shrimp trawl, fitted with a Rockhopper ("bicycle") footgear. The trawl extension and codend were lined with 12.7 mm knotless nylon mesh. Standard trawl tows were 15 minutes in duration, timed from bottom contact, with a target towing speed of 3 knots.For each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, and Greenland halibut. Roughly 2-kg of shrimp are sorted and weighed by species. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 3 files: a “Stations” file containing set information, a “Catches” file containing catches per set for all species caught and a “Carbio” file containing biological and morphometric measurements per individual all species measured except shrimps. The columns source_info, no_survey, nbpc and station_number serve as a common key linking the three datasets. To further link the “Captures” and the “Carbio” files to the species level (for fish and certain invertebrate species), use the columns source_info, no_survey, nbpc, station_number, strap_code, and category. Further shrimp biological and morphometric data are available but are not presented here in order to simplify data presentation. For access to the complete information, please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca). The latest published data is preliminary and will be updated at the end of January of the following year.It is important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. Data is available from 1997-2022 but please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca) for access and further details. For any other information please also contact the data management team.

Fisheries and Oceans Canada (DFO) conducted a winter multidisciplinary scientific surveys with a bottom trawl the northern Gulf of St. Lawrence and Cabot Straight from 1978 to 1994. The specificities of the missions onboard the MV Lady Hammond are described below.Objectives:1. Assess groundfish populations abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna4. Collect samples for various research projectsSurvey descriptionThis winter survey covers the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and 3Pn of the Northwest Atlantic Fisheries Organization (NAFO). A stratified random sampling strategy is used for this survey and the fishing gear used on the MV Gadus Atlantica is an Engel 145 Otter trawl. Standard trawling tows last 30 minutes, starting from the time the trawl touches the sea floor. Towing speed is 3.5 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish and otoliths are collected for Greenland halibut and Atlantic cod. Invertebrates are weighted and counted (no individual measurements).The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing morphometric measurements per individual and a “Freql” file containing the length frequency of fish. It's important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2021) and the CCGS Cabot (2022-current). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. The specificities of the missions onboard the CCGS Alfred Needler are described below.Objectives:1. Assess groundfish and northern shrimp population abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna4. Monitor the pelagic ecosystem5. Collect samples for various research projectsSurvey descriptionThe survey covers the divisions 4R, 4S, 3Pn and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). This survey follows a stratified random sampling design and the fishing gear used on the CCGS Alfred Needler is a URI shrimp trawl (81'/114'). Standard trawling tows last 25 minutes, starting from the time the trawl touched the sea floor. Towing speed is 3 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are collected for several species such as witch flounder, Atlantic cod, Greenland halibut and Atlantic halibut. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 5 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual, a “Freql” file containing the length frequency of fish and a “Shrimps” file containing information on shrimp catches.It's important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-present). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. However, comparative analyses have been carried out between vessels, and conversion factors are available on request for a number of species. The specificities of the missions onboard the CCGS Teleost are described below.Objectives:1. Assess groundfish and northern shrimp population abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna 4. Assess phytoplankton and mesozooplankton abundance5. Monitor the pelagic ecosystem6. Inventory marine mammals populations7. Inventory seabirds populations8. Collect samples for various research projectsSurvey descriptionThe survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary in order to sample the depths between 37 and 183 m. A stratified random sampling strategy is used for this survey and the area of the study area is 118,587 km². The fishing gear used on the CCGS Teleost is a four-sided Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The target towing speed is 3 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, Greenland halibut, and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a a “Carbio” file containing biological and morphometric measurements per individual and a “Shrimps” file containing information on shrimp catches.It's important to note that this is raw data. Only set considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Since 2017, industry-supported scientific surveys targeting Atlantic halibut (Hippoglossus hippoglossus) have been conducted in the Gulf of St. Lawrence and parts of the estuary. The primary objective of the project is to gather data on the species' abundance, distribution, and biological characteristics. To achieve this, a stratified random longline survey is carried out, during which Atlantic halibut of all sizes are measured and tagged using two spaghetti tags. Beginning in 2024, tissue samples from the pelvic fin of each individual were also collected for genetic analysis.Atlantic halibut are captured using longlines equipped with 500 circle hooks. While the length of the leaders varies among vessels, the spacing between leaders ranges from 3.6 to 5.5 meters. Fork length is measured for each individual of commercial species caught - such as Atlantic halibut, cod, redfish, and Greenland halibut (turbot). Measurements are also occasionally taken for non-commercial species.This publication includes the file Donnees_Releve_Fletan_Halibut_Survey_Data, which provides information associated with each sampled station. It also contains the number of Atlantic halibut, cod, redfish and Greenland halibut (turbot) caught at each station. It is important to note that only beginning in 2019 were all commercial species systematically measured. The "NA" values in 2017–2018 do not indicate that no individuals were caught, but rather that they were not measured systematically.Note: There are missing data in various columns of the dataset - use data with caution - if you have any questions please contact the data management team gddaiss-dmsaisb@dfo-mpo.gc.ca.

Fisheries and Oceans Canada (DFO) has conducted an annual multidisciplinary scientific survey using a bottom trawl in the Estuary and the northern Gulf of St. Lawrence during the summer since 1984. Over the years this survey has been conducted aboard four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-current). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. However, comparative analyses have been carried out between vessels, and conversion factors are available upon request for a number of species. The specificities of the missions onboard the CCGS Cabot are described below.Objectives:1. Assess groundfish and northern shrimp population abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna4. Assess phytoplankton and mesozooplankton abundance5. Monitor the pelagic ecosystem6. Collect samples for various research projectsSurvey descriptionThe survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary. Each year, approximately 200 sampling stations are randomly selected within depth-based strata, ranging from around 40 m near the shores to close to 500 m in the deep channels. The fishing gear used on the CCGS Cabot is a four-sided modified Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The targeted towing speed is 3 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted, and biological data are collected from a subsample. For fish and certain invertebrate species, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, Greenland halibut and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 3 files: a “Stations” file containing set information, a “Catches” file containing catches per set for all species caught and a “Carbio” file containing biological and morphometric measurements per individual all species measured except shrimps. The columns source_info, no_survey, nbpc and station_number serve as a common key linking the three datasets. To further link the “Captures” and the “Carbio” files to the species level (for fish and certain invertebrate species), use the columns source_info, no_survey, nbpc, station_number, strap_code, and category. Further shrimp biological and morphometric data are available but are not presented here in order to simplify data presentation. For access to the complete information, please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca). The latest published data is preliminary and will be updated at the end of January of the following year.It is important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

SummaryThe Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.DataThis dataset on the redfish (Sebastes sp.) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the periods of 1980-1996, 1999-2013, 2015-2016 and 2019. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years, this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2021) and the CCGS Cabot (2022-current). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. The specificities of the missions onboard the MV Lady Hammond are described below.Objectives:1. Assess groundfish populations abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna4. Monitor the pelagic ecosystem5. Collect samples for various research projectsSurvey descriptionThe survey covers the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). A stratified random sampling strategy is used for this survey and the fishing gear used on the MV Lady Hammond is a bottom trawl Western IIA. Standard trawling tows last 30 minutes, starting from the time the trawl touches the sea floor. Towing speed is 3.5 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are counted and biological data are collected on a sub-sample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish and otoliths are collected for redfish and Atlantic cod. Invertebrates are weighted and counted (no individual measurements).The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual and a “Freql” file containing the length frequency of fish. It's important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

The Fish Pathology Program (FPP) located at the Pacific Biological Station in Nanaimo has been assessing the health of aquatic animals since the early 1970’s. Utilizing traditional diagnostic methods, the FPP has supported internal and external clients to provide clinical data and management advice on the health of aquatic animals. The dataset contains information from diagnostic fish health cases coming from the Salmonid Enhancement Program, Research, Public and I&T submissions. Data contained in the database includes pathogen findings from submitted cases from all of the Pacific Region.The publication of The Fish Health Database will comply with public release recommendations documented in recommendation twenty two, made in volume three of the Final Report (October 2012) submitted by the Cohen Commission of Inquiry into the Decline of the Sockeye Salmon in the Fraser River.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a