A goal of the Government of Canada’s Coastal Environmental Baseline Program (CEBP) is to amalgamate historic environmental data from high vessel traffic areas. An extensive DFO biological sampling program was conducted from 1980 to 1981 on Sturgeon and Roberts banks located on the outer Fraser River estuary, BC, Canada. This report collates and simplifies three data sets: water quality and nearshore fish catch previously published as DFO Data Report 340 (Conlin et al.1982), and un- published weight-length (W-L) data for two locations on Sturgeon Bank (Iona and Steveston) and near Westshore Terminals (Coal Port) on Roberts Bank. W-L data were reconstructed from archived computer printouts using Optical Character Recognition methods. Analyses of water quality data indicate that the two banks provided different fish habitats with Sturgeon Bank having a greater freshwater influence. Although Iona area water quality was exposed to sewage outfall from a nearby sewage treatment plant, it appears that fish communities were not different from the other Sturgeon Bank area (Steveston). The fish communities were found to be different between the two banks with Roberts Bank having greater overall abundance and diversity. Interestingly, of the seven fish species used for condition factor analyses, five were found to have lower Relative Condition Factors in the Roberts Bank sampling area.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

This project was completed by the Groundfish Section in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO). From 2018 to 2020, 14 year-round, acoustic receivers were deployed in Placentia Bay as a part of the Coastal Environmental Baseline Program to form 4 gates: Bar Haven (2 receivers), Centre Channel (1 receiver), Eastern Channel (6 receivers), and Western Channel (5 receivers). Additionally, 162 transmitters were deployed in Atlantic cod in the 3Ps region (2019-2022). Over the deployment period these receivers recorded a total of 2 094 024 detections from 63 unique transmitters including 45 Cod tagged through the Groundfish acoustic telemetry program. Most cod detected were tagged in Placentia Bay (43 fish) and many were detected at multiple receivers or multiple years (37 fish). Passive data collection for this project may extend up to 2030. This record contains the locations of the acoustic receivers in Placentia Bay, NL.

Fishing event (e.g., day, time, location, catch effort), and associated biological data from the Standardized Inlet Survey component of the annual Sablefish Research and Assessment Survey on the British Columbia coast.IntroductionDFO and the Canadian Sablefish Association undertake a collaborative fishery-independent annual research survey under a joint agreement. The survey employs longline trap gear to obtain catch rate data, gather biological samples, capture oceanographic measurements, and collect tag release and recapture data.Data summaries are provided here for standardized sets conducted at fixed stations within mainland inlets. The design of the sablefish survey has developed over time by incorporating and discontinuing components, including individual experimental studies (not available on OpenData). This Standardized Inlet Survey component differs in methodology from the other two survey components: (1) Offshore stratified random survey (2003 – present; available on OpenData using link below), and(2) Standardized trap survey – offshore indexing and offshore tagging (1990 – 2010; not yet available on OpenData). For the Standardized Inlet Survey, sets are allocated to five specific polygons in each of the following four inlet areas: Portland Inlet, Gil Island, Finlayson Channel, and Dean/Burke Channel. All four inlets were surveyed consistently between 2003 and 2019. No inlets were surveyed in 2020, and a single inlet was surveyed each year since 2021. Survey procedures are standardized and documented in Canadian Technical Reports of Fisheries and Aquatic sciences.Data tables provided for the Standardized Inlet Survey include (i) Effort, (ii) Catch, and (iii) Biological Information.Inlet EffortThis table contains information about annual survey trips and fishing events (sets). Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the inlet name, date, time, location and depth that fishing took place, soak time, and number of traps deployed. All successful fishing events are included, where successful sets are those that met survey design specifications.Inlet CatchThis table contains the catch information from successful fishing events. Catch is identified to species or to the lowest taxonomic level possible. Catch is recorded as fish counts and / or weight. The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location) for each set.Inlet Biological InformationThis table contains the biological data for sampled catches. Data may include any or all of length, weight, sex, maturity and age. Most of the sampled catch is Sablefish; however, some biological information has been collected for other species. Age structures are collected and are archived until required for analyses; therefore, all existing structures have not been aged. Tissue samples (usually a fin clip) may be collected for genetic (DNA) analysis for specific species. Tissue samples may be archived until required for analysis; for more information please see the data contacts. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.

Basic biological data for all fish caught during the 2012 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level.

Atlantic sturgeon. Important sites: reproduction, feeding juvenile and adult concentration area. Data extracted from the Fish Habitat Management Information System (FHAMIS) according to a literature review of documents produced between 1978 and 2002.

The Department of Fisheries established a survey of demersal juvenile Atlantic cod (*Gadus morhua*) in the nearshore (<10 m deep) in 1959. This survey aimed to characterize the distribution and abundance of juvenile Atlantic cod and was based upon Norway's Flodevigen sampling program which has been conducted continuously since 1919. A 25 m seine was used to sample juvenile Atlantic cod nursery locations on the Avalon Peninsula and Northeast coast of the island of Newfoundland in September and October. The survey continued until 1964 and became known as the Fleming survey, after original initiator Alistair Fleming. The survey was reinstated by Memorial University of Newfoundland from 1992 to 1997. Multiple tows were conducted at a subset of the original 55 Fleming sites located in St. Mary's Bay, Trepassey Bay, the Southern Shore, Conception Bay, Trinity Bay, Bonavista Bay, Gander Bay, New World Island, Fortune Harbour, Badger Bay, Halls Bay and Green Bay.This data set includes several different subsets, some of which span both Fleming Survey periods (1959-1964 and 1992-1997):I. JuvCodCatch60s90s:Catches of juvenile Atlantic cod (1959-1964, 1992-1997) from the first two consecutive tows at each site. This is a summary based on JuvCodLengths90s and FlemingSurveyData60s;II. JuvCodLength90s:Lengths of all individual juvenile Atlantic cod caught for each site (1992-1997);III. SiteEnvData60s90s:Station data for Fleming data 1992-1997;IV. FlemingSurveyData60s:Fleming survey data from 1959-1964 (note there are three record types pertaining to: station data "type 1"; general species catch data including juvenile Atlantic cod grouped by age class ("1+", "Zeroes", and "Total") "type 2; and juvenile Atlantic cod (species 223) listed in length bins "type 3"; andV. FlemingBycatch60s92to96:Bycatch data from 1959-1964 & 1992-1996 from first two tows at each site. This is a summary based partly on the FlemingSurveyData60s set.

Fish holding areas (i.e. areas of concentration of salmon and herring, both adult and juvenile) in coastal British Columbia. Attribute information includes overall relative importance, species of salmon and other fish observed at various times throughout the year as well as information on spawning activity and larvae. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

A research survey of scallops (mainly sea scallop Placopecten magellanicus, but also Icelandic Scallop Chlamys islandica) using a dredge was carried out by DFO (Fisheries and Oceans Canada) every 1 or 2 years since 1992 in the Magdalen Islands (fishing area 20). The main objective of this research survey was to assess Sea Scallop stocks. Another objective was to document taxa associated with scallop habitat according to a fixed random sampling plan. Occurrences for the year 2021 and 2022 are presented by species (or taxon) by station. Starting in 2021, catches were weighed, and specimens photographed, with information available upon request. The taxonomic and geographical validity of the data was checked and the World Register of Marine Species served as the taxonomic authority for naming all taxa recorded during the survey. Epibenthic invertebrates (mainly molluscs, echinoderms and crustaceans) as well as demersal fish were identified from the dredge catches. The historical dataset is available at the following link : https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53bThe study area is located south of the Magdalen Islands and the sampling of scallop beds is carried out at depths of generally around 25 to 35 m. A random selection of sampling stations is carried out from a fixed station grid. Sampling is done along transects at these randomly drawn stations in the study area. Sampling is done with a lined Digby scallop dredge (20 mm mesh) over approximately 500 m along the seabed. The four baskets of the dredge are examined for all scallops, and starting in 2022, also for all fishes. One basket (first on the starboard side) is sorted and examined for associated species. Most specimens are counted by taxa. Those that are too small and numerous, or colonial, are noted for presence or relative abundance. Special cases are occasionally conserved for taxonomic analysis, for example, ascidians (to monitor for invasive species) and sponges (to document new species). The availability of photos and some conserved specimens enables future review. Changes are anticipated in the identifications, notably for Bryozoan, Hydrozoa, and Porifera, that are currently the focus of research efforts.

This project was completed by the Coastal Environmental Baseline Program (Coastal and Freshwater Ecology Section) in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO). The nearshore fish and invertebrate community was sampled annually in Placentia Bay at 14 sites for 5 years (2018 – 2022). The objective of this program was to collect data on juvenile fish (specifically Atlantic cod) communities and habitats within Placentia Bay. The sites and timing (October) were selected based on historical sampling. There were several data types collected during each of these sampling trips. Boat-based beach seining was used to collect data on fish and invertebrate diversity, abundance, distribution, and size. Visual transects were used to identify vegetation and substrate (habitat) types and proportions at seine sites. CTD profiles (temperature, conductivity, depth, and salinity) were obtained using a castaway CTD. Finally, eDNA samples were collected at each site (2018-2021) to obtain complementary information on the presence of juvenile fish and other species present. This record contains the geographic locations of the 14 sites, and information on the timing and type of data collected at each site.