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We have found 25 datasets for the keyword "aquacole". You can continue exploring the search results in the list below.
Datasets: 105,254
Contributors: 42
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25 Datasets, Page 1 of 3
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker Mifish (12S)
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a
Palmer Hydrological Drought Index
The term "Palmer Drought Index" has been used collectively to represent multiple indices. This index is simply a water balance model which analyzes precipitation and temperature, and used as a tool to measure meteorological and hydrological drought across space and time. All versions of the index uses the Versatile Soil Moisture Budget to model the movement of water within the system, and a daily Priestly-Taylor model to estimate evapotranspiration. The Palmer Drought Index (PDI) uses monthly temperature and precipitation data to calculate a simple soil water balance. The index is a relative measure that typically ranges from -4 (extremely dry) to +4 (extremely wet) and represents how soil moisture availability differs from that expected for a given place and time of year. The PDI includes a "memory" component that considers past conditions and persistence of soil moisture surplus or deficit.The Palmer Hydrological Drought Index (PHDI) is a specific version of the PDI that accounts for longer-term drought that reduces surface and groundwater supply.
Base Stream and Flow Representation
The Single Line Hydrography Network (SLNET) contains all captured single line representations of hydrographic features. In addition, single line representations of polygonal features and single line arbitrary network connectors are in the file.
Tree Type - Common Attribute Schema for Forest Resource Inventories
The Common Attribute Schema for Forest Resource Inventories (CASFRI) is a Canadian forest resource inventory data repository. Forest resource inventory datasets in CASFRI are harmonized to a common data model so that data collected by different agencies following different standards can be used together. Participating provincial, territorial and federal government departments and agencies share current and historical map-based forest resource inventory datasets through CASFRI so that their data are available to users who’s areas of interest span multiple jurisdictions. CASFRI was originally developed by academic researchers (Cumming et al., https://doi.org/10.1139/cjfr-2014-0102). This flavour of CASFRI (CASFRIv5) was developed anew in collaboration with academic researchers at the University of Laval to provide a government version of CASFRI that is findable, accessible, interoperable, and reusable. It uses the most up-to-date forest inventory data provided by participating provincial, territorial, and federal government departments and agencies. CASFRIv5 is hosted on the Canadian Council of Forest Ministers’ data portal, the National Forest Information System (http://nfis.org).
Palmer Modified Drought Index
The term "Palmer Drought Index" has been used collectively to represent multiple indices. This index is simply a water balance model which analyzes precipitation and temperature, and used as a tool to measure meteorological and hydrological drought across space and time. All versions of the index uses the Versatile Soil Moisture Budget to model the movement of water within the system, and a daily Priestly-Taylor model to estimate evapotranspiration.The Palmer Drought Index (PDI) uses monthly temperature and precipitation data to calculate a simple soil water balance. The index is a relative measure that typically ranges from -4 (extremely dry) to +4 (extremely wet) and represents how soil moisture availability differs from that expected for a given place and time of year. The PDI includes a "memory" component that considers past conditions and persistence of soil moisture surplus or deficit. The Modified Palmer Drought Index (PMDI) is obtained from the sum of the wet and dry terms weighted by probability values. The PMDI has the same value as the PDI during established dry or wet spells but can be different during transition periods.
Shorezone Biobanding Lines
The Shorezone Biobanding Lines are a linear representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.
Biodiversity of the Magdalen Islands Sea Scallop survey
A research survey of scallops (mainly sea scallop Placopecten magellanicus, but also Icelandic Scallop Chlamys islandica) using a dredge was carried out by DFO (Fisheries and Oceans Canada) every 1 or 2 years since 1992 in the Magdalen Islands (fishing area 20). The main objective of this research survey was to assess Sea Scallop stocks. Another objective was to document taxa associated with scallop habitat according to a fixed random sampling plan. Occurrences for the year 2021 and 2022 are presented by species (or taxon) by station. Starting in 2021, catches were weighed, and specimens photographed, with information available upon request. The taxonomic and geographical validity of the data was checked and the World Register of Marine Species served as the taxonomic authority for naming all taxa recorded during the survey. Epibenthic invertebrates (mainly molluscs, echinoderms and crustaceans) as well as demersal fish were identified from the dredge catches. The historical dataset is available at the following link : https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53bThe study area is located south of the Magdalen Islands and the sampling of scallop beds is carried out at depths of generally around 25 to 35 m. A random selection of sampling stations is carried out from a fixed station grid. Sampling is done along transects at these randomly drawn stations in the study area. Sampling is done with a lined Digby scallop dredge (20 mm mesh) over approximately 500 m along the seabed. The four baskets of the dredge are examined for all scallops, and starting in 2022, also for all fishes. One basket (first on the starboard side) is sorted and examined for associated species. Most specimens are counted by taxa. Those that are too small and numerous, or colonial, are noted for presence or relative abundance. Special cases are occasionally conserved for taxonomic analysis, for example, ascidians (to monitor for invasive species) and sponges (to document new species). The availability of photos and some conserved specimens enables future review. Changes are anticipated in the identifications, notably for Bryozoan, Hydrozoa, and Porifera, that are currently the focus of research efforts.
Martimes Summer Research Vessel Survey
“Summer” missions occur in June, July and August and these focus on the Scotian Shelf and Bay of Fundy (i.e. 4VWX 5Yb, expanding recently to include the Laurentian Channel and Georges Bank (5Zc). Collected data includes total catch in numbers and weights by species. Length frequency data is available for most species, as are the age, sex, maturity and weight information for a subset of the individual animals. Other data such as ageing material, genetic material, and stomach contents are often also collected, but are stored elsewhere.“Summer” cruises occur in May, June, July and August and these focus on the Scotian Shelf and Bay of Fundy (i.e. 4VWX).Cite this data as: Clark, D., Emberley, J. Data of MARITIMES SUMMER RESEARCH VESSEL SURVEYS. Published January 2021. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/1366e1f1-e2c8-4905-89ae-e10f1be0a164
Ecological Catalogue (formerly AquaCat)
A compendium of reports that provide information about aquatic and terrestrial animals and plants, soils, surface water, groundwater and their accompanying data files and maps
Lake Simcoe Protection Act Watershed Boundary
This boundary is used in the management of watershed-based planning by the Lake Simcoe Region Conservation Authority (LSRCA). It is used to support the Lake Simcoe Protection Act (LSPA). Instructions for downloading this dataset: * select the link below and scroll down the metadata record page until you find **Transfer Options** in the **Distribution Information** section * select the link beside the **Data for download** label * you must provide your name, organization and email address in order to access the dataset This product requires the use of GIS software. *[LSPA]: Lake Simcoe Protection Act *[GIS]: geographic information system *[LSRCA]: Lake Simcoe Region Conservation Authority
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