Bay-scale empirical demonstrations of how bivalve aquaculture alters plankton composition, and subsequently ecological functioning and higher trophic levels, are lacking. Temporal, inter- and within-bay variation in hydrodynamic, environmental, and aquaculture pressure limit efficient plankton monitoring design to detect bay-scale changes and inform aquaculture ecosystem interactions. Here, we used flow cytometry to investigate spatio-temporal variations in bacteria and phytoplankton (< 20 µm) composition in four bivalve aquaculture embayments. We observed higher abundances of bacteria and phytoplankton in shallow embayments that experienced greater freshwater and nutrient inputs. Depleted nutrient conditions may have led to the dominance of picophytoplankton cells, which showed strong within-bay variation as a function of riverine vs freshwater influence and nutrient availability. Although environmental forcings appeared to be a strong driver of spatio-temporal trends, results showed that bivalve aquaculture may reduce near-lease phytoplankton abundance and favor bacterial growth. We discuss aquaculture pathways of effects such as grazing, benthic-pelagic coupling processes, and microbial biogeochemical cycling. Conclusions provide guidance on optimal sampling considerations using flow cytometry in aquaculture sites based on embayment geomorphology and hydrodynamics.Cite this data as: Sharpe H, Lacoursière-Roussel A, Barrell J (2024). Monitoring bay-scale bivalve aquaculture ecosystem interactions using flow cytometry. Version 1.2. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=monitoring_bay-scale_bivalve_aquaculture_ecosystem_interactions_using_flow_cytometry&v=1.2

Bivalve aquaculture has direct and indirect effects on plankton communities, which are highly sensitive to short-term (seasonal, interannual) and long-term climate changes, although how these dynamics alter aquaculture ecosystem interactions is poorly understood. Here, we investigate seasonal patterns in plankton abundance and community structure spanning several size fractions from 0.2 µm up to 5 mm, in a deep aquaculture embayment in northeast Newfoundland, Canada. Using flow cytometry and FlowCam imaging, we observed a clear seasonal relationship between fraction sizes driven by water column stratification (freshwater input, nutrient availability, light availability, water temperature). Plankton abundance decreased proportionally with increasing size fraction, aligning with size spectra theory. Within the bay, greater mesozooplankton abundance, and a greater relative abundance of copepods, was observed closest to the aquaculture lease. No significant spatial effect was observed for phytoplankton composition. While the months of August to October showed statistically similar plankton composition and size spectra slopes (i.e., food chain efficiency) and could be used for interannual variability comparisons of plankton composition, sampling for longer periods could capture long-term phenological shifts in plankton abundance and composition related to various processes, including climate change. Conclusions provide guidance on optimal sampling to monitor and assess aquaculture pathways of effects.Cite this data as: Sharpe H, Lacoursière-Roussel A, Gallardi D (2024). Ecological insight of seasonal plankton succession to monitor shellfish aquaculture ecosystem interactions. Version 3.2. Fisheries and Oceans Canada. Sampling event dataset. https://doi.org/10.25607/2ujdvh

The Nova Scotia Department of Fisheries and Aquaculture is the lead regulatory of aquaculture leasing and licensing. This file illustrates all the issued landbased licenses within Nova Scotia. Fisheries and Aquaculture also provides a mapping tool for this data at: http://novascotia.ca/fish/aquaculture/site-mapping-tool/

The project (Quoddy Region Pelagics Telemetry) will support the assessment of the effects of aquaculture on the distribution and abundance of pelagic fishes (salmon, mackerel, herring) and large predators (shark, marine mammals) in Passamaquoddy Bay and the Bay of Fundy, an area of intense finfish culture. An acoustic receivers network is placed yearly (from April to December) across various passageways, locations of project-specific interest, and at aquaculture sites in the region. Tagged pelagic species will be tracked through the network to provide information on migration routes, movement speed, survival rates and suspected predators, and determine interaction and residence at aquaculture sites. The network was utilized for monitoring the passage of: hatchery-reared wild salmon (n=340) released in the Magaguadavic River in 2018, 2019 and 2021, wild alewives (n=30) from the St. Croix River in 2021, and farmed Atlantic salmon released in the wild (n=99) in 2021. The receiver network has more recently supported adjacent projects on the use of the region by white shark and porbeagle as well as the residence of mackerel, herring, and sculpin at farm sites. The receivers additionally support other researchers with detection of striped bass, Inner Bay of Fundy Atlantic salmon, sturgeon, and many other species. Placement of the network will continue into 2025 inclusive with the longer-term goal to eventually deploy an array covering the entrance to the Bay of Fundy.Cite this data as: Trudel, M., Wilson, B., Black, M. 2023. Assessing bay-scale impacts of aquaculture operations on the distribution and abundance of pelagic fishes and large predators. Accessed via the Ocean Tracking Network OBIS IPT in January 2025 (version 3.1). https://doi.org/10.14286/xfa6sr

This dataset reports on lobster abundance and individual biological characteristics (size, sex, shell hardness, egg status), along with seabed substrate information, collected at various coastal sites in the Bay of Fundy, Canada. Surveys were conducted over a 40-year period between 1982 and 2021. Survey areas and SCUBA dive sites were located around Grand Manan Island, Deer Island, Campobello Island, and along the Bay of Fundy’s New Brunswick shore stretching from Passamaquoddy Bay, east to Maces Bay. One survey area was located on the Bay of Fundy’s southern shore (Nova Scotia) in the Annapolis Basin (Lawton et al. 1995). The data represent a compilation of SCUBA diving surveys (1003 belt transects) conducted directly by Fisheries and Oceans Canada (DFO) scientific SCUBA divers (1982-2019), or by contracted commercial divers funded in association with outside collaborating organizations; Department of Fisheries and Agriculture (DFA; 1990 – 1993), the Grand Manan Fishermen’s Association (GMFA; 2013-2015), and the University of New Brunswick (UNB; 2019-2021).Cite this data as: Lawton P, Dinning K, Rochette R, Teed L. American lobster (Homarus americanus) abundance and biological characteristics collected from SCUBA dive surveys in the Bay of Fundy from 1982-2021. Published August 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B.For additional information please see:Campbell, A. 1990. Aggregations of berried lobsters (Homarus americanus) in shallow waters off Grand Manan, eastern Canada. DFO Can. J. Fish. Aquat. Sci. 47: 520-523.Denton, C.M. 2020. Maritimes Region Inshore Lobster Trawl Survey Technical Description. DFO Can. Tech. Rep. Fish. Aquat. Sci. 3376: v + 52 p.Lawton, P. 1993. Salmon aquaculture and the traditional invertebrate fisheries of the Fundy Isles region: habitat mapping and impact definition: Cooperation Agreement on Fisheries and Aquaculture Development. Submitted by Peter Lawton to the New Brunswick Department of Fisheries and Aquaculture, 84 p. Unpublished monograph. Available from Fisheries and Oceans Canada Library, Dartmouth, NS (Monographs: SH 380.2 .C2 .L39 1992).https://science-catalogue.canada.ca/record=3943769~S6Lawton, P., Robichaud, D.A., and Moisan, M. 1995. Characteristics of the Annapolis Basin, Nova Scotia, lobster fishery in relation to proposed marine aquaculture development. DFO Can. Tech. Rep. Fish. Aquat. Sci. 2035: iii + 26 p.Lawton, P., Robichaud, D.A., Rangeley, R.W., and Strong, M.B. 2001. American Lobster, Homarus americanus, population characteristics in the lower Bay of Fundy (Lobster Fishing Areas 36 and 38) based on fishery independent sampling. DFO Can. Sci. Advis. Sec. Res. Doc. 2001/093.Wentworth, C.K. 1922. A Scale of Grade and Class Terms for Clastic Sediments. The Journal of Geology 30(5): 377-392.Dinning, K.M., Lawton, P., and Rochette, R. 2025. Increased use of mud bottom by juvenile American lobsters (Homarus americanus) in Maces Bay and Seal Cove, Bay of Fundy, after three decades of population increases and predator declines. Canadian Journal of Fisheries & Aquatic Sciences 82; https://doi.org/10.1139/cjfas-2023-0312

Environmental Monitoring Program data for aquaculture.

Map of harbours critical to fishing and aquaculture industries managed by harbour authorities (Core fishing harbours), harbours that support fishing and aquaculture industries that aren’t managed by harbour authorities (Non-core fishing harbours), and harbours that support the recreational community (Recreational harbours).

The boundaries of a unit of a Shellfish Aquaculture Plan within a Coastal Plan

As part of the development of a nationally-consistent sampling design within the Aquaculture Monitoring Program (AMP), this data reports mesozooplankton assemblages observed at nine coastal shellfish aquaculture sites, located across four DFO regions, with sampling across months, tide phases, and sampling locations. In most sites, strong spatial effects were observed, while tide effects were generally less important for structuring the mesozooplankton communities. Seasonality emerged as an essential factor to design an efficient monitoring program. This dataset represents the first large-scale Canadian coastal study using imaging technology for plankton taxonomic Identification.Cite this data as: Finnis, S., Guyondet, T., McKindsey, C.W., Arseneau, J., Barrell, J., Duhaime, J., Filgueira, R., Gallardi, D., Gaspard, D., Gibb, O., Goodwin, C., Hua, K., Macdonald, T., Milne, R., Lacoursière-Roussel, A. 2023. Guidance on sampling effort to monitor mesozooplankton communities at Canadian bivalve aquaculture sites using an optical imaging system. Can. Tech. Rep. Fish. Aquat. Sci. 3581: vii + 101 p

The Nova Scotia Department of Fisheries and Aquaculture is the lead regulatory of rockweed leasing and licensing. This file illustrates all the issued rockweed leases along the coast of Nova Scotia. Fisheries and Aquaculture also provides a Nova Scotia Aquaculture and Rockweed Map viewer at: https://fishaqua.maps.arcgis.com/apps/instant/media/index.html?appid=a7c3520e73894539afadf8602ee57ef1