Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

Total soil moisture is the modelled amount of plant available water (mm) in the root zone of the soil. The value given is the amount calculated to be present on the modeled day of the product.Values are computed using the Versatile Soil Moisture Budget (VSMB)

Catch, effort, location (latitude, longitude), relative abundance indices, and associated biological data from groundfish multi-species bottom trawl surveys in West Coast Haida Gwaii.Introduction The West Coast Haida Gwaii (WCHG) synoptic bottom trawl survey was first conducted annually from 2006 to 2008 and has since been repeated every second year on even numbered years. The survey was not impacted by the COVID-19 pandemic. This survey is one of a set of long-term and coordinated surveys that together cover the continental shelf and upper slope of most of the British Columbia coast. The other surveys are the Queen Charlotte Sound (QCS) survey, the Hecate Strait (HS) survey, the West Coast Vancouver Island (WCVI) survey, and the Strait of Georgia (SOG) survey. The objectives of these surveys are to provide fishery independent abundance indices of all demersal fish species available to bottom trawling and to collect biological samples of selected species. The survey follows a random depth-stratified design and the sampling units are 2 km by 2 km blocks. The synoptic bottom trawl surveys are conducted by Fisheries and Oceans Canada (DFO) in collaboration with the Canadian Groundfish Research and Conservation Society (CGRCS), a non-profit society composed of participants in the British Columbia commercial groundfish trawl fishery. The Queen Charlotte Sound and West Coast Haida Gwaii surveys are conducted under collaborative agreements, with the CGRCS providing chartered commercial fishing vessels and field technicians, while DFO provides in-kind contributions for running the surveys including personnel and equipment. The Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys are conducted by DFO and have typically taken place on a Canadian Coast Guard research vessel. Until 2016 this vessel was the CCGS W.E. Ricker. From 2021 onwards, this vessel was the CCGS Sir John Franklin. In years when a coast guard vessel has not been available, the Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys have taken place on chartered industry vessels. Data from these surveys are also presented in the groundfish data synopsis report (Anderson et al. 2019).EffortThis table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught.CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).BiologyThis table contains the available biological data for catches which were sampled. Data may include any or all of length, sex, weight, age. Different length types are measured depending on the species. Age structures are collected when possible for species where validated aging methods exist and are archived until required for an assessment; therefore, all existing structures have not been aged at this time. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.BiomassThis table contains relative biomass indices of species that have been captured in every survey of the time series. The coefficient of variation and bootstrapped 95% confidence intervals are provided for each index. The groundfish data synopsis report (Anderson et al. 2019) provides an explanation of how the relative biomass indices are derived. Note that we do not calculate a biomass index for the 2014 West Coast Haida Gwaii survey, as this survey was incomplete due to operational problems.

PURPOSE:As a part of a two-decade series of research, this study aims to provide a comprehensive synthesis of the effects of harvest and environmental change on fisheries in Great Bear Lake. The main objectives are to assess demographic traits and the current status of harvested species, with a focus on evaluating sustainable harvest levels of lake trout, a cold-adapted species with a relatively narrow thermal niche. As part of this research, trends in water quality and primary productivity are monitored to evaluate potential effects of change on fisheries. DESCRIPTION:Great Bear Lake, one of the largest lakes in North America, contains culturally and recreationally important fish species. Great Bear Lake is located in the sub-Arctic and Arctic Circle. As part of a two-decade series of research aimed to provide a comprehensive synthesis of the effects of harvest and environmental change on fisheries in Great Bear Lake, the main objectives of this study are to assess demographic traits and the current status of harvested species, with a focus on evaluating sustainable harvest levels of lake trout, a cold-adapted species with a relatively narrow thermal niche. As part of this research, trends in water quality and primary productivity are monitored to evaluate potential effects of change on fisheries. From 2012 to 2019, surface water temperature data was collected at depths of 0.1 to 1.0 meters using a Hydrolab Series 5 Data Sonde Multiparameter instrument through partnered community-led and community/Fisheries and Oceans Canada/university partners collaborative sampling. The project has strong community involvement, including youth through the Guardian Program, to facilitate capacity building and community leadership in the long-term monitoring of Great Bear Lake fisheries and the aquatic ecosystem. This data is an extension of baseline data sets on water quality on the lake. These data will contribute to a better understanding cumulative impacts of climate change on the functioning of large northern lake ecosystems and provide a benchmark for monitoring further change. This data will be important for developing effective strategies for maintaining community-led aquatic monitoring and managing natural resources, particularly fish, which are expected to be increasingly important to communities with declines in other country foods such as caribou. We acknowledge the data were collected in the Sahtú Settlement Area and are made publicly available with the agreement of the Délı̨nę Renewable Resources Council (Délı̨nę Ɂehdzo Got’ı̨nę (Renewable Resources Council)).Collaborators include: the Community of Délı̨nę partners (data collection), Délı̨nę Renewable Resource Council, University of Manitoba, University of Queens, University of British Columbia, University of Alberta, Environment and Climate Change Canada, and Great Lakes Fisheries Commission, Sahtú Renewable Resource Board. Community of Délı̨nę partners and field workers that participated in data collection include Daniel Baton, Morris Betsidea, Joey Dillion, Jade English, Stanley Ferdanan, Bruce Kenny, Elaine Kenny, Darren Kenny, Greg Kenny, Joseph Kenny, Rocky Kenny, Ted Mackienzo, George Menacho, Bobby Modeste, Gina Nyelle, Brent Taniton, Allison Tatti, Gerald Tutcho, Archie Vital, Barbara Yukon, Caroline Yukon, Chris Yukon, and Cyre Yukon.Funding and logistical support was provided by: Northwest Territories Cumulative Impact Monitoring, Natural Sciences and Engineering Research Council of Canada, Environment and Climate Change Canada, Sahtú Renewable Resource Board, the Polar Continental Shelf Program, and Fisheries and Oceans Canada.

The contaminants in fish database is a compilation of contaminant data analysed from fish tissue at the Fresh Water Institute from 1970 to 2005. Data include lab number, region, analysis, organs, species, lake, form (whole fish, headon dressed, headless dressed), weight, and length and contaminant concentrations. Total mercury was the predominant contaminant measured. Results were expressed as ppm or ppb based on the parameter analyzed. Concentrations are expressed based on wet weight.

Herring biological (fish and sample) data as part of Herring Stock Assessment database

PURPOSE:This study is part of a two-decade series of research aimed to provide a comprehensive synthesis of the effects of harvest and environmental change on fisheries in Great Bear Lake. The main objectives are to assess demographic traits and the current status of harvested species, with a focus on evaluating sustainable harvest levels of lake trout, a cold-adapted species with a relatively narrow thermal niche. As part of this research, trends in water quality and primary productivity are monitored to evaluate potential effects of change on fisheries. DESCRIPTION:Great Bear Lake, one of the largest lakes in North America, contains culturally and recreationally important fish species. Great Bear Lake is located in the sub-Arctic and Arctic Circle. As part of a two-decade series of research aimed to provide a comprehensive synthesis of the effects of harvest and environmental change on fisheries in Great Bear Lake, the main objectives of this study are to assess demographic traits and the current status of harvested species, with a focus on evaluating sustainable harvest levels of lake trout, a cold-adapted species with a relatively narrow thermal niche. As part of this research, trends in water quality and primary productivity are monitored to evaluate potential effects of change on fisheries. From 2021 to 2024, surface water temperature data was collected at depths of 0.1 to 1.0 meters using an RBR Maestro3 through partnered community-led and community/Fisheries and Oceans Canada/university partner collaborative sampling. The project has strong community involvement, including youth through the Guardian Program, to facilitate capacity building and community leadership in the long-term monitoring of Great Bear Lake fisheries and the aquatic ecosystem. This data is an extension of baseline data sets on water quality on the lake. These data will contribute to a better understanding cumulative impacts of climate change on the functioning of large northern lake ecosystems and provide a benchmark for monitoring further change. This data will be important for developing effective strategies for maintaining community-led aquatic monitoring and managing natural resources, particularly fish, which are expected to be increasingly important to communities with declines in other country foods such as caribou.We acknowledge the data were collected in the Sahtú Settlement Area and are made publicly available with the agreement of the Délı̨nę Renewable Resources Council (Délı̨nę Ɂehdzo Got’ı̨nę (Renewable Resources Council)). Collaborators include: the Community of Délı̨nę partners (data collection), Délı̨nę Renewable Resource Council, Sahtú Renewable Resource Board, and University of Manitoba. Community of Délı̨nę partners and field workers that participated in data collection include Chris Yukon, Archie Vital, Ted Mackienzo, Daniel Baton, Lloyd Baton, Simon Neyelle, and Stanley Ferdanan.Funding and logistical support was provided by: Northwest Territories Cumulative Impact Monitoring, Sahtú Renewable Resource Board, the Polar Continental Shelf Program and Fisheries and Oceans Canada.

Gridded pH of the Estuary and Gulf of St. Lawrence bottom waters including shallow waters. Data are a result of a 3D interpolation on a 1km x 1km x bottom depth grid. All the available CTD data sampled during the 2017 August and September multidisciplinary surveys were used.PurposeSince 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources.The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling.The southern Gulf surveys are realized using the following standardized protocol:Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p.The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications:Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p.Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

The Shorezone Biobanding Lines are a linear representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.

The Department of Fisheries and Oceans (DFO) Science Branch has designed a multispecies dive survey protocol to provide unbiased, coast wide monitoring of benthic invertebrate stocks (as may be required under the updated Fisheries Act) and associated habitat information for a suite of benthic marine invertebrate species (Green (Strongylocentrotus droebachiensis), Purple (S. purpuratus) and Red Sea Urchin (Mesocentrotus franciscanus), Geoduck (Panopea generosa), Giant Red Sea Cucumber (Apostichopus californicus), Northern Abalone (Haliotis kamtschatkana), and Sunflower Sea Star (Pycnopodia helianthoides)). Based on information available at this time, the proposed survey design can provide estimates of coast wide stock status for Red Sea Urchin and Giant Red Sea Cucumber, and relative abundance indices for Geoduck, Green Sea Urchin, Purple Sea Urchin, Northern Abalone and Sunflower Sea Star.The new protocol was tested through a series of pilot surveys conducted on a subset of areas of the BC coast each September from 2016-2021. Design of the pilot surveys was based on previous dive survey data and experience and demonstrated the practical feasibility of the protocol, while also gathering preliminary information to guide recommendations about the statistical design of the survey.The dataset consists of a relational database containing tables representing each component of the survey methodology. The primary component of the survey is a transect location. Along each transect, systematically spaced quadrats are sampled, and on each quadrat, substrate observations are recorded, multiple species of algae are recorded, and multiple individual invertebrates are measured or counted. The tables are linked by transect number and quadrat number.