Benthic Marine Ecounits in coastal and offshore British Columbia. Benthic ecounits are intended to describe the sea bed and nearshore. Seven variables were selected to derive benthic ecounits: 1. Depth; 2. Slope; 3. Relief; 4. Temperature; 5. Exposure; 6. Current and 7. Substrate. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

Marine classification schemes based on abiotic surrogates often inform regional marine conservation planning in lieu of detailed biological data. However, theses chemes may poorly represent ecologically relevant biological patterns required for effective design and management strategies. We used a community-level modeling approach to characterize and delineate representative mesoscale (tens to thousands of kilometers) assemblages of demersal fish and benthic invertebrates in the North-west Atlantic. Hierarchical clustering of species occurrence data from four regional annual multispecies trawl surveys revealed three to six groupings (predominant assemblage types) in each survey region, broadly associated with geomorphic and oceanographic features. Indicator analyses identified 3–34 emblematic taxa of each assemblage type. Random forest classifications accurately predicted assemblage dis-tributions from environmental covariates (AUC > 0.95) and identified thermal limits (annual minimum and maximum bottom temperatures) as important pre-dictors of distribution in each region. Using forecasted oceanographic conditions for the year 2075 and a regional classification model, we projected assemblage dis-tributions in the southernmost bioregion (Scotian Shelf-Bay of Fundy) under ahigh emissions climate scenario (RCP 8.5). Range expansions to the north eastare projected for assemblages associated with warmer and shallower waters of the Western Scotian Shelf over the 21st century as thermal habitat on the rela-tively cooler Eastern Scotian Shelf becomes more favorable. Community-level modeling provides a biotic-informed approach for identifying broadscale ecolog-ical structure required for the design and management of ecologically coherent, representative, well-connected networks of Marine Protected Areas. When com-bined with oceanographic forecasts, this modeling approach provides a spatial tool for assessing sensitivity and resilience to climate change, which can improve conservation planning, monitoring, and adaptive management.Cite this data as: O'Brien, J.M., Stanley, R.R.E., Jeffery, N.W., Heaslip, S.W., DiBacco, C., and Wang, Z. Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic.Published: December 2024. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS.https://open.canada.ca/data/en/dataset/14d55ea5-b17d-478c-b9ee-6a7c04439d2b

The objective of benthos monitoring is to know the state of benthic macroinvertebrate communities in rivers according, in particular, to the composition of the substrate and the type of flow. Information on benthic macroinvertebrate samples collected at benthos monitoring stations is classified according to the benthos health index: iSBG for coarse-substrate streams and iSBM for soft-substrate streams. The Benthos Health Index (ISB) is a multimetric index based on benthic macroinvertebrates that assesses the biotic integrity of shallow streams. The benthos monitoring dataset includes a layer of sampling stations sampled between 2003 and 2023 and a layer of drainage areas for each of the types of substrate, either coarse or loose. The drainage area attribute table also provides a compilation of land use by category for the last year available at the time of data production, i.e. the year 2020.**This third party metadata element was translated using an automated translation tool (Amazon Translate).**

This 1:20,000. scale inventory contains digital maps of cancelled community watershed boundaries. The watershed boundaries showed the location of watersheds that supply communities with domestic water. These are meant to be used in conjunction with stream network map coverages from TRIM mapping. Attribute data for community watersheds can be downloaded into a spreadsheet or database

In 2012 and 2013, Fisheries and Oceans Canada surveyed the benthos in two areas closed to bottom contact fishing, the Narwhal Overwintering and Coldwater Coral Zone (now the Disko Fan Conservation Area, DFCA), and the Hatton Basin Voluntary Coral Protection Zone (now the Hatton Basin Conservation Area, HBCA). Samples were collected following protocols recommended by the Arctic Council’s Circumpolar Biodiversity Monitoring Plan for the purposes of providing baseline data for future monitoring of benthic invertebrates in this sensitive region, and for facilitating pan-Arctic comparisons of benthic communities. Five biodiversity monitoring stations were established, four in the DFCA and one in the HBCA, each of which was fully sampled according to those protocols with Van Veen grabs or box corers, drop cameras and temperature recorders attached to the gear. This report summarises the grab/core-sampled benthic fauna collected during the 2012 survey of the Conservation Areas and complements another report documenting the epibenthos from the camera transects in the DFCA. Here we report on macrofauna in the 1-cm size fraction, and on foraminiferan meiofauna.The data provided is presented in the following report (see related link) :Jacobs, K., Bouchard Marmen, M., Rincón, B., MacDonald, B., Lirette, C., Gibb, O., Treble, M., and Kenchington, E. 2022. Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Can. Tech. Rep. Fish. Aquat. Sci. 3487: vi + 86 p.Cite this data as: Bouchard Marmen, Marieve; Rincon, Beatriz ; MacDonald, Barry; Lirette, Camille; Gibb, Olivia; Treble, Margaret ; Jacobs, Kevin; Kenchington, Ellen (2022). Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Published January 2023. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/b7bcff18-698b-4d40-a7bd-13d39925cbeb

Boundaries (polygons) of areas designated as community watershed by government - that are all or part of the drainage area that is upslope of the lowest point from which water is diverted for human consumption by a licensed waterworks, if satisfied that, to protect the water that is diverted for human consumption, the area requires special management that is not otherwise provided for under this regulation or other enactment: to conserve the quality, quantity and timing of water flow; or to prevent cumulative hydrological effects that would have a material adverse effect on the water . Supercedes the '(DEPRECATED) BC Community Watersheds' dataset BC_COMMUNITY_WATERSHEDS

Effective fisheries and habitat management processes require knowledge of the distribution of areas of high ecological or biological significance. On the Scotian Shelf and Slope, a number of benthic ecologically or biologically significant areas consisting of habitat-forming species such as sponges and deep-water corals have been identified. However, knowledge of their spatial distribution is largely based on targeted surveys that are limited in their spatial extent. We used a species distribution modelling approach called random forest (RF) to predict the probability of occurrence and biomass of sponges, sea pens, and large and small gorgonian corals across the entire spatial extent of Fisheries and Oceans Canada’s (DFO) Maritimes Region. We also modelled the rare sponge Vazella pourtalesi, which forms the largest known aggregation of its kind on the Scotian Shelf. We utilized a number of data sources including DFO multispecies trawl catch data and in situ benthic imagery observations. Most models had excellent predictive capacity with cross-validated Area Under the Receiver Operating Characteristic Curve (AUC) values ranging from 0.760 to 0.977. Areas of suitable habitat were identified for each taxon and were contrasted against their known distribution and when applicable, the location of closure areas designated for their protection. Generalized additive models (GAMs) were developed to predict the biomass distribution of each taxonomic group and serve as a comparison to the RF models. The RF and GAM models provided comparable results, although GAMs provided superior predictions of biomass along the continental slope for some taxonomic groups. In the absence of data observations, the results of this study could be used to identify the potential distribution of sensitive benthic taxa for use in fisheries and habitat management applications. These results could also be used to refine significant concentrations of these taxa as identified through the kernel density analyses.Cite this data as: Beazley, Lindsay; Kenchington, Ellen; Murillo-Perez, Javier; Lirette, Camille; Guijarro-Sabaniel, Javier; McMillan, Andrew; Knudby, Anders (2019). Species Distribution Modelling of Corals and Sponges in the Maritimes Region for Use in the Identification of Significant Benthic Areas. Published July 2023. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/356e92f3-5bf3-4810-98b1-3e10cd7742aa

This inventory, conducted from September 26th to October 3th, 2019, aimed to describe the community structure of macroalgae and benthic macroinvertebrates of five small estuaries of the Upper North Shore of Quebec, namely Barthélemy Bay and the Colombier, Mistassini, Franquelin and Saint-Nicolas rivers. This inventory is part of a doctoral study of Valentine Loiseau on the global changes in the St. Lawrence system, mainly the study of marine benthic communities in response to changes of salinity, to ensure proper management of the environment in the face of future changes. The main objective is to describe the structure and the levels of specific diversities of mediolittoral communities of benthic macroinvertebrates and macroalgae along a salinity gradient. These five small estuaries were selected because of their similar size, hard substrates and easy access. Three levels of hypoosmotic stress (low, medium, high) and one control level (seawater) were used for each of the selected estuaries, with eight quadrats per stress level. Quadrat positions were randomly selected but had to meet two criteria: (1) regular height in the foreshore to control the influence of other stresses (temperature, exposure); and (2) presence of at least one macroalga to maintain homogeneity. A percentage cover by macroalgal and macroinvertebrate species was estimated, and then all organisms were weighed by species and size group. The salinity of the nearest water point was measured at mid-tide with a portable refractometer and a Castaway-type CTD (Conductivity-Temperature-Density) probe. The inventory was done using a stratified random sampling design and the sampling unit was a quadrat measuring 25 x 25 cm. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes the generic information of the quadrat, including date and location. The "additional_information_event_and_occurrence" file includes salinity and substrate type of the quadrat, as well as the total weight of all individuals of the same species caught in the quadrat extrapolated to one square metre of surface. For nudibranchs and barnacles, weight was estimated from the size of the individuals so that they were not removed from the environment. The "taxon_occurrence" file includes the taxonomic inventory of macroalgal and benthic macroinvertebrate species observed in the quadrat, identified to the lowest possible species or taxonomic level and biomass by identified species.For quality control, organisms were identified on the field using the following guide: Chabot, Robert et Anne Rossignol. 2003. Algues et faune du littoral du Saint-Laurent maritime : Guide d'identification. Institut des Sciences de la mer de Rimouski, Rimouski ; Pêches et Océans Canada (Institut Maurice-Lamontagne), Mont-Joli. 113 pages. The taxonomy was checked against the World Register of Marine Species (WoRMS) to match recognized standards and using the R obistools and worrms libraries. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. All sample locations were spatially validated. This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

The purpose of the survey is to document and record habitat types and associated algae and marine invertebrate species in a variety of habitat types. Transect locations are randomly selected throughout the study area, which rotates between the north and south coasts of British Columbia on a biannual basis. Transects are laid perpendicular to the shoreline. A team of two divers swim the transect with data sheets to collect habitat, algae and marine invertebrate data as detailed below in the methods section. Data is keypunched in an MS Access database that can be queried for species observations and environmental information.This dataset includes three tables pulled from the original database containing observations by species, observations by quadrat, and additional header information for each observation. All three tables can be linked by the field HKey. Three lookup tables are included as well, one for algae, one for invertebrates, and one for substrates.

DescriptionConservation of marine biodiversity requires understanding the joint influence of ongoing environmental change and fishing pressure. Addressing this challenge requires robust biodiversity monitoring and analyses that jointly account for potential drivers of change. Here, we ask how demersal fish biodiversity in Canadian Pacific waters has changed since 2003 and assess the degree to which these changes can be explained by environmental change and commercial fishing. Using a spatiotemporal multispecies model based on fisheries independent data, we find that species density (number of species per area) and community biomass have increased during this period. Environmental changes during this period were associated with temporal fluctuations in the biomass of species and the community as a whole. However, environmental changes were less associated with changes in species’ occurrence. Thus, the estimated increases in species density are not likely to be due to environmental change. Instead, our results are consistent with an ongoing recovery of the demersal fish community from a reduction in commercial fishing intensity from historical levels. These findings provide key insight into the drivers of biodiversity change that can inform ecosystem-based management.The layers provided represent three community metrics: 1) species density (i.e., species richness), 2) Hill-Shannon diversity, and 3) community biomass. All layers are provided at a 3 km resolution across the study domain for the period of 2003 to 2019. For each metric, we provide layers for three summary statistics: 1) the mean value in each grid cell over the temporal range, 2) the probability that the grid cell is a hotspot for that metric, and 3) the temporal coefficient of variation (i.e., standard deviation/mean) across all years.Methods:The analysis that produced these layers is presented in Thompson et al. (2022). The analysis uses data from the Groundfish Synoptic Bottom Trawl Research surveys in Queen Charlotte Sound (QCS), Hecate Strait (HS), West Coast Vancouver Island (WCVI), and West Coast Haida Gwaii (WCHG) from 2003 to 2019. Cartilaginous and bony fish species caught in DFO groundfish surveys that were present in at least 15% of all trawls over the depth range in which they were caught were included. This depth range was defined as that which included 95% of all trawls in which that species was present. The final dataset used in our analysis consisted of 57 species (Table S1 in Thompson et al. 2022).The spatiotemporal dynamics of the demersal fish community were modeled using the Hierarchical Modeling of Species Communities (HMSC) framework and package (Tikhonov et al. 2021) in R. This framework uses Bayesian inference to fit a multivariate hierarchical generalized mixed model. We modeled community dynamics using a hurdle model, which consists of two sub models: a presence-absence model and a biomass model that is conditional on presence. Our list of environmental covariates included bottom depth, bathymetric position index (BPI), mean summer tidal speed, substrate muddiness, substrate rockiness, whether the trawl was inside or outside of the ecosystem-based trawling footprint, and survey region (QCS & HS vs. WCVI & WCHG)), mean summer near-bottom temperature deviation, mean summer near-bottom dissolved oxygen deviation, mean summer cross-shore and along-shore current velocities near the seafloor, mean summer depth-integrated primary production, and local-scale commercial fishing effort.Layers are provided for three community metrics. All metrics should be interpreted as the value that would be expected in the catch from an average tow in the Groundfish Synoptic Bottom Trawl Research Surveys taken in a given 3 km grid cell. Species density (sometimes called species richness) should be interpreted as the number of the 57 species that would be caught in a trawl. Hill-Shannon diversity is a measure of diversity that gives greater weight to communities where biomass is spread equally across species. Community biomass is the total biomass across all 57 species that would be expected to be caught per square km in an average tow. Data Sources:Research data was provided by Pacific Science's Groundfish Data Unit for research surveys from the GFBio database between 2003 and 2019 that occurred in four regions: Queen Charlotte Sound, Hecate Strait, West Coast Haida Gwaii, and West Coast Vancouver Island. Our analysis excludes species that are rarely caught in the research trawls and so our estimates would not include the occurrence or biomass of these rare species.Commercial fishing data was accessed through a DFO R script detailed here: https://github.com/pbsassess/gfdata. Local scale commercial fishing effort was calculated from this data. The substrate layers were obtained from a substrate model (Gregr et al. 2021). The oceanographic layers (bottom temperature, dissolved oxygen, tidal and circulation speeds, primary production) were obtained from a hindcast simulation of the British Columbia continental margin (BCCM) model (Peña et al. 2019).Uncertainties:Species that are not well sampled by the trawl surveys may not be accurately estimated by our model. The model did not include spatiotemporal random effects, which likely underestimates spatiotemporal variability in the region. It is also important to underline covariate uncertainty and model uncertainty. The hotspot estimates provide one measure of model uncertainty/certainty.