BiologicEcologic ISO Feature Dataset symbolization and publication. September 5, 2017.

The Shorezone Biobanding Polygons are an area representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.

The Canadian Aquatic Biomonitoring Network (CABIN) is an aquatic biomonitoring program for assessing the health of fresh water ecosystems in Canada. Benthic macroinvertebrates are collected at a site location and their counts are used as an indicator of the health of that water body. CABIN is based on the network of networks approach that promotes inter-agency collaboration and data-sharing to achieve consistent and comparable reporting on fresh water quality and aquatic ecosystem conditions in Canada. The program is maintained by Environment and Climate Change Canada (ECCC) to support the collection, assessment, reporting and distribution of biological monitoring information. A set of nationally standardized CABIN protocols are used for field collection, laboratory work, and analysis of biological monitoring data. A training program is available to certify participants in the standard protocols. There are two types of sites in the CABIN database (reference and test). Reference sites represent habitats that are closest to “natural” before any human impact. The data from reference sites are used to create reference models that CABIN partners use to evaluate their test sites in an approach known as the Reference Condition Approach (RCA). Using the RCA models, CABIN partners match their test sites to groups of reference sites on similar habitats and compare the observed macroinvertebrate communities. The extent of the differences between the test site communities and the reference site communities allows CABIN partners to estimate the severity of the impacts at those locations. CABIN samples have been collected since 1987 and are organized in the database by study (partner project). The data is delineated by the 11 major drainage areas (MDA) found in Canada and each one has a corresponding study, habitat and benthic invertebrate data file. Links to auxiliary water quality data are provided when available. Visits may be conducted at the same location over time with repeat site visits being identified by identical study name / site code with different dates. All data collected by the federal government is available on Open Data and more partners are adding their data continually. The csv files are updated monthly. Contact the CABIN study authority to request permission to access non open data.

The Shorezone Biobanding Lines are a linear representation of the various types of biota (flora and fauna) and their distribution, or lack thereof, found in the shoreunit.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b

A point file showing a collection of specific GPS spatial points recorded during the video taping of the shoreline. The points are represented by a specific latitude and longitude taken at a specific date and time. Each are associated with a specific BIOSLIDE at a specific SHOREUNIT in the Shorezone data

Bioterrain (TBT) contains polygons with key and amalgamated (concatenated) attributes derived from the RISC (Resource Inventory Standards Committee) standard attributes. TBT divides the landscape into units using the Terrain Classification System for British Columbia and ecological criteria. Polygon attributes include (but are not limited to) surficial material, surface expression, geomorphological processes, drainage class and aspect. TBT methods include manual air photo interpretation supported by selective field checking. Bioterrain mapping is integral to ecosystem mapping and its derivative products. This layer is derived from the STE_TEI_ATTRIBUTE_POLYS_SP layer by filtering on the PROJECT_TYPE attribute. Project types include: TEM, TEMNSS, TEMPRE, TEMSEI, TEMSET, TEMTSM, TBS, TBT, TEMWHR, TEMSDM, TEMPRW, and TEMSEW. Current version: v11 (published on 2024-10-03) Previous versions: v10 (published on 2023-11-14), v9 (published on 2023-03-01), v8 (published on 2016-09-01)

This resource documents a dataset of epifauna occurrences collected in 2021 during The Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) program developed by the Department of Fisheries and Oceans Canada (DFO) in collaboration with university partners. The overall objective of KEBABB is to characterize the variability and trends in physical, chemical, and biological oceanographic conditions and food webs supporting fisheries in the connected ecosystems of western Baffin Bay and Lancaster Sound. In 2021, DFO expanded the KEBABB program to Barrow Strait (KEBABS-Knowledge and Ecosystem-Based Approach in Barrow Strait), a key productive area of the Tallurutiup Imanga National Marine Conservation Area. The study took place in the Eastern Canadian Arctic (mainly in Baffin Bay, Davis Strait and Barrow Strait). Sampling is done along transects at fixed stations in the study area. Catches are collected with a 1.5 m Agassiz trawl (5 mm mesh net) for 3 minutes bottom-contact time at a target speed of 1.5 knots and with a 3 m benthic beam trawl (6.4 mm mesh net) for 15 minutes bottom-contact time at a target speed of 3 knots. A total of 16 stations were sampled for epifauna in 2021 between 85-850 m depth. Epibenthic invertebrates are identified to the lowest possible taxonomic level and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The “Activité_épifaune_KEBABB_epifauna_event_en” file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The “Occurrence_épifaune_KEBABB_epifauna_en” file that contains the taxonomic occurrences.Further details on sampling can be found in the following report: Pućko, M., Charette, J., Tremblay P., Brulotte S., St-Denis B., Ciastek S., Hedges, K., Kuzyk, Z., Roy V., and Michel, C. 2022. An ecosystem-based approach in the eastern Arctic: KEBABB/S (Knowledge and Ecosystem-Based Approach in Baffin Bay/Barrow Strait) 2021 expedition report. Can. Manuscr. Rep. Fish. Aquat. Sci. 3250: viii + 58 p. https://publications.gc.ca/collections/collection_2022/mpo-dfo/Fs97-4-3250-eng.pdfUSE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Description:This dataset consists of monthly mean simulation results from Canada's three Oceans: the Atlantic, Pacific and Arctic from 2015 to 2017.Abstract from the report:A numerical ocean model with biogeochemistry has been developed for a domain that spans Canada's three oceans: the Atlantic, Pacific and Arctic. The domain extends to 26°N in the Atlantic and 44°N in the Pacific, and spans the full width of each basin as well as the whole of the Arctic Ocean. The resolution is moderate to high (≈0.25°, 75 levels). A series of simulations was conducted to assess the best choices for biogeochemical model parameters across the diverse regions, using a variety of validation data sets including satellite ocean colour (surface chlorophyll and particulate organic carbon, integrated primary production), surface underway pCO2, and depth profiles of oxygen and nitrate concentration from ships and Argo floats. In addition to parameter values, processes examined include interactive sediments, fluvial nutrients, light attenuation by fluvial coloured dissolved organic matter (CDOM), and iron limitation. The results indicate that the optimal parameter set is one that limits phytoplankton losses to grazing and other processes so as to ensure strong biological drawdown of dissolved inorganic carbon and nutrients in spring and summer; among the parameter sets tested both insufficient and excessive drawdown were observed. Sensitivity to other processes such as interactive sediments, fluvial nutrients or CDOM attenuation was weak in most regions. In some regions, attenuation by CDOM or sequestration of nutrients in the sediment can substantially reduce primary production and zooplankton biomass, and fluvial nutrients can cause localized reduction of pCO2 by as much as 60 μatm. Iron limitation has an effect on the model solution in regions generally considered iron-replete; building a model that successfully spans iron-limited and non-iron-limited domains will require complete and accurate specification of iron sources and sinks.

Pepin et al. (2014) stated that three nested spatial scales were identified as relevant for the development of ecosystem summaries and management plans: Bioregion, Ecosystem Production Unit (EPU), and Ecoregion. A bioregion is composed by one or more EPUs, while an EPU consists of a combination of ecoregions, which represent elements with different physical and biological characteristics based on the analytical criteria applied. Pepin et al. (2014) reported on the consolidation of data and analyses of ecoregion structure for the continental shelf areas from the Labrador Sea to the mid-Atlantic Bight and provided recommendations on the definition of EPUs in the NAFO Convention Area. The results of two K-means clustering analyses (one geographically constrained and one un-constrained) and expert knowledge (including and considering location of ecoregions, knowledge of the distribution of major marine resources and fish stocks, and geographic proximity for delineation/definition of potential management units) served as guides for evaluation by NAFO’s (North Atlantic Fisheries Organization) working group on ecosystem science and assessments (WG-ESA). The final consensus from the discussions identified eight (8) major EPUs that can serve as practical candidate management units (from the 50 m isobaths, where research vessel data were available, seaward to the 1500 m isobaths) that consist of the Labrador Shelf (NAFO subareas 2GH), the northeast Newfoundland Shelf (subareas 2J3K), the Grand Banks (subareas 3LNO), Flemish Cap (subarea 3M), the Scotian Shelf (subareas 4VnsWX), Georges Bank (parts of subareas 5Ze and 5Zw), the Gulf of Maine (subarea 5Y and part of 5Ze) and the mid-Atlantic Bight (part of subarea 5Zw and subareas 6ABC). Southern Newfoundland (subarea 3Ps) was not included in the original analysis because fall survey data were unavailable. However, it was later added as an EPU after additional analysis of the fish community structure and trends using survey data from the spring, which indicated that this area is heavily influenced by the surrounding EPUs (NAFO 2015).The proposed candidate management units correspond to the EPUs that define major areas within the bioregions which contain a reasonably well defined food web/production system. The working group noted that the consensus solution represents a compromise that aims to define management units based on the boundaries of existing NAFO subareas that are appropriate for estimation of ecosystem and fishery production. References: NAFO. 2015. Report of the 8th Meeting of the NAFO Scientific Council (SC) Working Group on Ecosystem Science and Assessment (WGESA). 17-26 November 2015, Dartmouth, Canada. NAFO SCS Doc. 15/19.Pepin, P., Higdon, J., Koen-Alonso, M., Fogarty, M., and N. Ollerhead. 2014. Application of ecoregion analysis to the identification of Ecosystem Production Units (EPUs) in the NAFO Convention Area. NAFO SCR Doc. 14/069.