Bay-scale empirical demonstrations of how bivalve aquaculture alters plankton composition, and subsequently ecological functioning and higher trophic levels, are lacking. Temporal, inter- and within-bay variation in hydrodynamic, environmental, and aquaculture pressure limit efficient plankton monitoring design to detect bay-scale changes and inform aquaculture ecosystem interactions. Here, we used flow cytometry to investigate spatio-temporal variations in bacteria and phytoplankton (< 20 µm) composition in four bivalve aquaculture embayments. We observed higher abundances of bacteria and phytoplankton in shallow embayments that experienced greater freshwater and nutrient inputs. Depleted nutrient conditions may have led to the dominance of picophytoplankton cells, which showed strong within-bay variation as a function of riverine vs freshwater influence and nutrient availability. Although environmental forcings appeared to be a strong driver of spatio-temporal trends, results showed that bivalve aquaculture may reduce near-lease phytoplankton abundance and favor bacterial growth. We discuss aquaculture pathways of effects such as grazing, benthic-pelagic coupling processes, and microbial biogeochemical cycling. Conclusions provide guidance on optimal sampling considerations using flow cytometry in aquaculture sites based on embayment geomorphology and hydrodynamics.Cite this data as: Sharpe H, Lacoursière-Roussel A, Barrell J (2024). Monitoring bay-scale bivalve aquaculture ecosystem interactions using flow cytometry. Version 1.2. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=monitoring_bay-scale_bivalve_aquaculture_ecosystem_interactions_using_flow_cytometry&v=1.2

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in Canada (British Columbia, New Brunswick, Newfoundland and Labrador, Nova Scotia, Prince Edward Island and Quebec). These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations based on pollution source assessment and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications that may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in Prince Edward Island, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in New Brunswick, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in British Columbia, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in Quebec, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in Nova Scotia, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

This dataset provides geospatial polygon boundaries for marine bivalve shellfish harvest area classification in Newfoundland and Labrador, Canada. These data represent the five classification categories of marine bivalve shellfish harvest areas (Approved; Conditionally Approved; Restricted; Conditionally Restricted; and Prohibited) under the Canadian Shellfish Sanitation Program (CSSP). Data are collected by Environment and Climate Change Canada (ECCC) for the purpose of making applicable classification recommendations on the basis of sanitary and water quality survey results. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO). These geographic data are for illustrative purposes only; they show shellfish harvest area classifications when in Open Status. The classification may be superseded at any time by regulatory orders issued by DFO, which place areas in Closed Status, due to conditions such as sewage overflows or elevated biotoxin levels. For further information about the current status and boundary coordinates for areas under Prohibition Order, please contact your local DFO office.This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/7aef69b5-3aaf-4d50-bb86-083031e6dc47

As part of the development of a nationally-consistent sampling design within the Aquaculture Monitoring Program (AMP), this data reports mesozooplankton assemblages observed at nine coastal shellfish aquaculture sites, located across four DFO regions, with sampling across months, tide phases, and sampling locations. In most sites, strong spatial effects were observed, while tide effects were generally less important for structuring the mesozooplankton communities. Seasonality emerged as an essential factor to design an efficient monitoring program. This dataset represents the first large-scale Canadian coastal study using imaging technology for plankton taxonomic Identification.Cite this data as: Finnis, S., Guyondet, T., McKindsey, C.W., Arseneau, J., Barrell, J., Duhaime, J., Filgueira, R., Gallardi, D., Gaspard, D., Gibb, O., Goodwin, C., Hua, K., Macdonald, T., Milne, R., Lacoursière-Roussel, A. 2023. Guidance on sampling effort to monitor mesozooplankton communities at Canadian bivalve aquaculture sites using an optical imaging system. Can. Tech. Rep. Fish. Aquat. Sci. 3581: vii + 101 p

This dataset provides marine bacteriological water quality data for bivalve shellfish harvest areas in Canada (British Columbia, New Brunswick, Newfoundland and Labrador, Nova Scotia, Prince Edward Island and Quebec). Shellfish harvest area water temperature and salinity data are also provided as adjuncts to the interpretation of fecal coliform concentration data. The latter is the indicator of fecal contamination monitored by Environment and Climate Change Canada (ECCC) within the framework of the Canadian Shellfish Sanitation Program (CSSP). The geospatial positions of the sampling sites are also provided.These data are collected by ECCC for the purpose of making recommendations on the classification of shellfish harvest area waters. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO).