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We have found 130 datasets for the keyword "caged invertebrates". You can continue exploring the search results in the list below.
Datasets: 104,050
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130 Datasets, Page 1 of 13
Survey for the assessment of Unit 2 Redfish (CCGS John Cabot)
Monitoring of Unit 2 redfish by Fisheries and Oceans Canada (DFO) ceased in 2002. Since then, the Atlantic Groundfish Council (AGC, formerly the Groundfish Enterprise Allocation Council [GEAC]) has funded surveys approximately every two years in the area, in collaboration with DFO. Over the years, various vessels and gear types have been used. In 2024, a comparative survey was conducted using the CCGS John Cabot and a fishing industry vessel (the Léry Charles) to develop conversion factors that allow data from the 2020, 2022, and 2024 Unit 2 redfish surveys to be standardized to CCGS John Cabot equivalents. The survey covered the waters off southwestern Newfoundland and eastern Cape Breton, corresponding to redfish management Unit 2, which includes NAFO subdivisions 3Pn, 3Ps, 4Vn, 4Vs, and 4W. Here, data collected aboard the CCGS John Cabot are presented. Objectives• Assess the abundance and condition of groundfish and invertebrates• Assess environmental conditions• Inventory the biodiversity of benthic and demersal megafauna• Monitor the pelagic ecosystem• Collect samples for various research projectsData The CCGS John Cabot employed a four-sided modified Campelen 1800 shrimp trawl, fitted with a Rockhopper ("bicycle") footgear. The trawl extension and codend were lined with 12.7 mm knotless nylon mesh. Standard trawl tows were 15 minutes in duration, timed from bottom contact, with a target towing speed of 3 knots.For each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, and Greenland halibut. Roughly 2-kg of shrimp are sorted and weighed by species. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 4 files: a “Stations” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual and a “Shrimps” file containing information on shrimp catches. The columns source_info, no_survey, nbpc and set_number serve as a common key linking the four datasets.It is important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. Data is available from 1997-2022 but please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca) for access and further details. For any other information please also contact the data management team.
Biodiversity of the Benthic Epifauna Trawl Survey from CBS-MEA program (2021-2024)
This dataset documents the epifauna occurrences collected from 2021 to 2024 during the Canadian Beaufort Sea Marine Ecosystem Assessment (CBS-MEA) conducted by the Department of Fisheries and Oceans (DFO). This scientific program focuses on the integration of oceanography, food web linkages, physical-biological couplings, and spatial and interannual variabilities. The program also aims to expand the baseline coverage of species diversity, abundances, and habitat associations in previously unstudied areas of the Beaufort Sea and Western Canadian Archipelago. The study took place mainly in the Canadian Beaufort Sea and the Amundsen Gulf. Sampling is done along transects at fixed stations in the study area. Catches are collected with a 3 m benthic beam trawl for 10 minutes bottom-contact time at a target speed of 2 knots and with a modified Atlantic Western IIA otter trawl for 20 minutes bottom-contact time at a target speed of 2.9 knots. A total of 32 stations were sampled for epifauna in 2021, 22 in 2022, 23 in 2023 and 22 in 2024, between 22-655 m depth. Epibenthic invertebrates were identified to the lowest taxonomic level possible and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The "Activité_épifaune_CBSMEA_epifauna_event_en" file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "Occurrence_épifaune_CBSMEA_epifauna_en" file that contains the taxonomic occurrences.
Multispecies Dive Pilot Surveys
The Department of Fisheries and Oceans (DFO) Science Branch has designed a multispecies dive survey protocol to provide unbiased, coast wide monitoring of benthic invertebrate stocks (as may be required under the updated Fisheries Act) and associated habitat information for a suite of benthic marine invertebrate species (Green (Strongylocentrotus droebachiensis), Purple (S. purpuratus) and Red Sea Urchin (Mesocentrotus franciscanus), Geoduck (Panopea generosa), Giant Red Sea Cucumber (Apostichopus californicus), Northern Abalone (Haliotis kamtschatkana), and Sunflower Sea Star (Pycnopodia helianthoides)). Based on information available at this time, the proposed survey design can provide estimates of coast wide stock status for Red Sea Urchin and Giant Red Sea Cucumber, and relative abundance indices for Geoduck, Green Sea Urchin, Purple Sea Urchin, Northern Abalone and Sunflower Sea Star.The new protocol was tested through a series of pilot surveys conducted on a subset of areas of the BC coast each September from 2016-2021. Design of the pilot surveys was based on previous dive survey data and experience and demonstrated the practical feasibility of the protocol, while also gathering preliminary information to guide recommendations about the statistical design of the survey.The dataset consists of a relational database containing tables representing each component of the survey methodology. The primary component of the survey is a transect location. Along each transect, systematically spaced quadrats are sampled, and on each quadrat, substrate observations are recorded, multiple species of algae are recorded, and multiple individual invertebrates are measured or counted. The tables are linked by transect number and quadrat number.
Benthic Invertebrates, Oil Sands Region
Benthic invertebrates monitoring includes both lotic (rivers/streams) and lentic (wetlands) ecosystems. Aquatic biomonitoring provides a direct measure of change in biotic populations and communities in relation to benchmark or reference conditions and can help identify the ecological effects of cumulative stressors. Used together with the water chemical and physical monitoring components, this program uses an integrated approach to assess whether ecological affects are occurring in response to OS developments. Sampling can include the collection of invertebrates, algal biomass, water chemistry, and appropriate supporting habitat information and is conducted during periods of high abundance and diversity of macroinvertebrates. Sampling focuses on near-shore gravel and sand habitats on the Athabasca River, erosional habitats on major tributaries and in wadable areas in deltaic wetlands within the Expanded Geographical Area. As of October 2012, over 80 locations have been visited.
Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic
Marine classification schemes based on abiotic surrogates often inform regional marine conservation planning in lieu of detailed biological data. However, theses chemes may poorly represent ecologically relevant biological patterns required for effective design and management strategies. We used a community-level modeling approach to characterize and delineate representative mesoscale (tens to thousands of kilometers) assemblages of demersal fish and benthic invertebrates in the North-west Atlantic. Hierarchical clustering of species occurrence data from four regional annual multispecies trawl surveys revealed three to six groupings (predominant assemblage types) in each survey region, broadly associated with geomorphic and oceanographic features. Indicator analyses identified 3–34 emblematic taxa of each assemblage type. Random forest classifications accurately predicted assemblage dis-tributions from environmental covariates (AUC > 0.95) and identified thermal limits (annual minimum and maximum bottom temperatures) as important pre-dictors of distribution in each region. Using forecasted oceanographic conditions for the year 2075 and a regional classification model, we projected assemblage dis-tributions in the southernmost bioregion (Scotian Shelf-Bay of Fundy) under ahigh emissions climate scenario (RCP 8.5). Range expansions to the north eastare projected for assemblages associated with warmer and shallower waters of the Western Scotian Shelf over the 21st century as thermal habitat on the rela-tively cooler Eastern Scotian Shelf becomes more favorable. Community-level modeling provides a biotic-informed approach for identifying broadscale ecolog-ical structure required for the design and management of ecologically coherent, representative, well-connected networks of Marine Protected Areas. When com-bined with oceanographic forecasts, this modeling approach provides a spatial tool for assessing sensitivity and resilience to climate change, which can improve conservation planning, monitoring, and adaptive management.Cite this data as: O'Brien, J.M., Stanley, R.R.E., Jeffery, N.W., Heaslip, S.W., DiBacco, C., and Wang, Z. Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic.Published: December 2024. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS.https://open.canada.ca/data/en/dataset/14d55ea5-b17d-478c-b9ee-6a7c04439d2b
Biodiversity of the Benthic Epifauna Trawl Survey from KEBABB program (2021)
This resource documents a dataset of epifauna occurrences collected in 2021 during The Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) program developed by the Department of Fisheries and Oceans Canada (DFO) in collaboration with university partners. The overall objective of KEBABB is to characterize the variability and trends in physical, chemical, and biological oceanographic conditions and food webs supporting fisheries in the connected ecosystems of western Baffin Bay and Lancaster Sound. In 2021, DFO expanded the KEBABB program to Barrow Strait (KEBABS-Knowledge and Ecosystem-Based Approach in Barrow Strait), a key productive area of the Tallurutiup Imanga National Marine Conservation Area. The study took place in the Eastern Canadian Arctic (mainly in Baffin Bay, Davis Strait and Barrow Strait). Sampling is done along transects at fixed stations in the study area. Catches are collected with a 1.5 m Agassiz trawl (5 mm mesh net) for 3 minutes bottom-contact time at a target speed of 1.5 knots and with a 3 m benthic beam trawl (6.4 mm mesh net) for 15 minutes bottom-contact time at a target speed of 3 knots. A total of 16 stations were sampled for epifauna in 2021 between 85-850 m depth. Epibenthic invertebrates are identified to the lowest possible taxonomic level and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The “Activité_épifaune_KEBABB_epifauna_event_en” file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The “Occurrence_épifaune_KEBABB_epifauna_en” file that contains the taxonomic occurrences.Further details on sampling can be found in the following report: Pućko, M., Charette, J., Tremblay P., Brulotte S., St-Denis B., Ciastek S., Hedges, K., Kuzyk, Z., Roy V., and Michel, C. 2022. An ecosystem-based approach in the eastern Arctic: KEBABB/S (Knowledge and Ecosystem-Based Approach in Baffin Bay/Barrow Strait) 2021 expedition report. Can. Manuscr. Rep. Fish. Aquat. Sci. 3250: viii + 58 p. https://publications.gc.ca/collections/collection_2022/mpo-dfo/Fs97-4-3250-eng.pdfUSE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.
Important Areas for Invertebrates in Strait of Georgia Ecoregion
This layer details Important Areas (IAs) relevant to key invertebrate species (which are not corals or sponges) in the Strait of Georgia (SOG) ecoregion. This data was mapped to inform the selection of marine Ecologically and Biologically Significant Areas (EBSA). Experts have indicated that these areas are relevant based upon their high ranking in one or more of three criteria (Uniqueness, Aggregation, and Fitness Consequences). The distribution of IAs within ecoregions is used in the designation of EBSAs.Canada’s Oceans Act provides the legislative framework for an integrated ecosystem approach to management in Canadian oceans, particularly in areas considered ecologically or biologically significant. DFO has developed general guidance for the identification of ecologically or biologically significant areas. The criteria for defining such areas include uniqueness, aggregation, fitness consequences, resilience, and naturalness. This science advisory process identifies proposed EBSAs in Canadian Pacific marine waters, specifically in the Strait of Georgia (SOG), along the west coast of Vancouver Island (WCVI, southern shelf ecoregion), and in the Pacific North Coast Integrated Management Area (PNCIMA, northern shelf ecoregion).Initial assessment of IA's in PNCIMA was carried out in September 2004 to March 2005 with spatial data collection coordinated by Cathryn Clarke. Subsequent efforts in WCVI and SOG were conducted in 2009, and may have used different scientific advisors, temporal extents, data, and assessment methods. WCVI and SOG IA assessment in some cases revisits data collected for PNCIMA, but should be treated as a separate effort.Other datasets in this series detail IAs for birds, cetaceans, coral and sponges, fish, geographic features, and other vertebrates.Though data collection is considered complete, the emergence of significant new data may merit revisiting of IA's on a case by case basis.
Biodiversity of the Benthic Infauna Box Core Survey from CBS-MEA program (2021-2023)
This dataset documents the infauna occurrences collected from 2021 to 2023 during the Canadian Beaufort Sea Marine Ecosystem Assessment (CBS-MEA) conducted by the Department of Fisheries and Oceans (DFO). This scientific program focuses on the integration of oceanography, food web linkages, physical-biological couplings, and spatial and interannual variabilities.The program also aims to expand the baseline coverage of species diversity, abundances, and habitat associations in previously unstudied areas of the Beaufort Sea and Western Canadian Archipelago. The study took place mainly in the Canadian Beaufort Sea and the Amundsen Gulf. Sampling is done along transects at fixed stations in the study area. Catches are collected using a 50 x 50 cm box-corer. 2 or 3 box core is collected per station to obtain replicates. A total of 29 stations were sampled for infauna in 2021, 15 in 2022 and 25 in 2023 between 10-653 m depth. Half of the box corer (0.125 m2) is sampled for infauna taxonomy. The first 20 cm of sediment are collected and sieved through a 0.5 mm mesh sieve. The samples are preserved in seawater-formaldehyde solution (10 % v/v). In the lab, infauna is identified to the lowest taxon level possible.The data are presented in two files:The "Activité_endofaune_CBSMEA_infauna_event_en" file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "Occurrence_endofaune_CBSMEA_infauna_en" file that contains the taxonomic occurrences.
Benthic invertebrates in seagrass and bare soft sediments in Atlantic Nova Scotia
This dataset contains the abundance (per m²) and the biomass (mg dry per m²) of macrofauna (≥ 500µm) in eelgrass and adjacent bare soft sediments, collected at sites in the Atlantic of Nova Scotia from 2009 to 2013.Cite this data as: Wong M.C. Data of Benthic invertebrates in seagrass and bare soft sediments in Atlantic Nova Scotia Published May 2020. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/05d5f46a-7f19-11ea-8a4e-1860247f53e3Publications: Wong, M. C., & Dowd, M. (2021). Functional trait complementarity and dominance both determine benthic secondary production in temperate seagrass beds. Ecosphere. 12(11), e03794. https://doi.org/10.1002/ecs2.3794Wong, M. C. (2018). Secondary Production of Macrobenthic Communities in Seagrass (Zostera marina, Eelgrass) Beds and Bare Soft Sediments Across Differing Environmental Conditions in Atlantic Canada. Estuaries and Coasts, 41, 536–548. https://doi.org/10.1007/s12237-017-0286-2
Important Areas for Invertebrates in Pacific North Coast Integrated Management Area
This layer details Important Areas (IAs) relevant to key invertebrate species (which are not corals or sponges) in the Pacific North Coast Integrated Management Area (PNCIMA). This data was mapped to inform the selection of marine Ecologically and Biologically Significant Areas (EBSA). Experts have indicated that these areas are relevant based upon their high ranking in one or more of three criteria (Uniqueness, Aggregation and Fitness Consequences). The distribution of IAs within ecoregions is used in the designation of EBSAs.Canada’s Oceans Act provides the legislative framework for an integrated ecosystem approach to management in Canadian oceans, particularly in areas considered ecologically or biologically significant. DFO has developed general guidance for the identification of ecologically or biologically significant areas. The criteria for defining such areas include uniqueness, aggregation, fitness consequences, resilience, and naturalness. This science advisory process identifies proposed EBSAs in Canadian Pacific marine waters, specifically in the Strait of Georgia (SOG), along the west coast of Vancouver Island (WCVI, southern shelf ecoregion), and in the Pacific North Coast Integrated Management Area (PNCIMA, northern shelf ecoregion).Initial assessment of IAs in PNCIMA was carried out in September 2004 to March 2005 with spatial data collection coordinated by Cathryn Clarke. Subsequent efforts in WCVI and SOG were conducted in 2009, and may have used different scientific advisors, temporal extents, data, and assessment methods. WCVI and SOG IA assessment in some cases revisits data collected for PNCIMA, but should be treated as a separate effort.Other datasets in this series detail IAs for birds, cetaceans, coral and sponges, fish, geographic features, and other vertebrates.Though data collection is considered complete, the emergence of significant new data may merit revisiting of IAs on a case by case basis.
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