Summer, Winter Alpine, and Winter Forest-Dwelling habitat model for caribou in the Itcha, Ilgachuz, and Rainbow Mountains of West-Central BC. This habitat model was developed using telemetry from the Itcha-Ilgachuz, Rainbow, and Charlotte Alplands Herds. [Season] field should be used to split the data out into separate summer, winter alpine, and winter forest-dwelling habitat models. Model development is detailed in _Apps, C. D., T. A. Kinley, and J. A. Young. 2001. Multi-scale habitat modeling for woodland caribou in the Itcha, Ilgachuz, and Rainbow mountains of west-central British Columbia.Wildlife Section, Ministry of Water, Land and Air Protection, Williams Lake, British Columbia, Canada_. See also: https://catalogue.data.gov.bc.ca/dataset/caribou-habitat-model-for-the-western-cariboo-region-2017-. __Note: The 2017 habitat model covers a similar area, but does not supersede the 2001 habitat model.__

The purpose of the survey is to document and record habitat types and associated algae and marine invertebrate species in a variety of habitat types. Transect locations are randomly selected throughout the study area, which rotates between the north and south coasts of British Columbia on a biannual basis. Transects are laid perpendicular to the shoreline. A team of two divers swim the transect with data sheets to collect habitat, algae and marine invertebrate data as detailed below in the methods section. Data is keypunched in an MS Access database that can be queried for species observations and environmental information.This dataset includes three tables pulled from the original database containing observations by species, observations by quadrat, and additional header information for each observation. All three tables can be linked by the field HKey. Three lookup tables are included as well, one for algae, one for invertebrates, and one for substrates.

Summer, Spring, Early Winter, and Late Winter multi-scale habitat model for mountain caribou in the Western Cariboo Region / Columbia Highlands / Northern Columbia Mountains. [Season] field should be used to split the data out into separate summer, spring, early winter, and late winter habitat models. [Model development is detailed in _Apps, C. D. and T. A. Kinley. 2000. Multiscale Habitat Modeling for Mountain Caribou in the Columbia Highlands and Northern Columbia Mountains Ecoregions, British Columbia.Wildlife Section, Ministry of Water, Land and Air Protection, Williams Lake, British Columbia, Canada](http://www.env.gov.bc.ca/cariboo/env_stewardship/wildlife/inventory/caribou/mtncar/hmi/habitatmod04-00.pdf).

The Scotian Shelf population of northern bottlenose whales (Hyperoodon ampullatus) is listed as Endangered under Canada’s Species at Risk Act. Partial critical habitat was identified for this population in the Recovery Strategy first published in 2010 (Fisheries and Oceans Canada 2016), and three critical habitat areas were designated along the eastern Scotian Shelf, encompassing the Gully, Shortland Canyon, and Haldimand Canyon (shapefile available online: https://open.canada.ca/data/en/dataset/db177a8c-5d7d-49eb-8290-31e6a45d786c). However, the Recovery Strategy recognized that additional areas may constitute critical habitat for the population and recommended further studies based on acoustic and visual monitoring to assess the importance of inter-canyon areas as foraging habitat and transit corridors for northern bottlenose whales.In a subsequent study of the distribution, movements, and habitat use of northern bottlenose whales on the eastern Scotian Shelf (Stanistreet et al. in press), several sources of data were assessed and additional important habitat was identified in the inter-canyon areas located between the Gully, Shortland Canyon, and Haldimand Canyon (DFO 2020). A summary of the data inputs, analyses, and limitations is provided below.Year-round passive acoustic monitoring conducted with bottom-mounted recorders at two inter-canyon sites from 2012-2014 revealed the presence and foraging activity of northern bottlenose whales in these areas throughout much of the year, with a seasonal peak in acoustic detections during the spring. Detections from acoustic recordings collected during vessel-based surveys provided additional evidence of species occurrence in inter-canyon areas during the summer months. Photo-identification data collected in the Gully, Shortland, and Haldimand canyons between 2001 and 2017 were used to model the residency and movement patterns of northern bottlenose whales within and between the canyons, and demonstrated that individuals regularly moved between the three canyons as well as to and from outside areas. Together, these results indicated a strong degree of connectivity between the Gully, Shortland, and Haldimand canyons, and provided evidence that the inter-canyon areas function as important foraging habitat and movement corridors for Scotian Shelf northern bottlenose whales. The inter-canyon habitat area polygon was delineated using the 500 m depth contour and straight lines connecting the southeast corners of the existing critical habitat areas, but these boundaries are based on limited spatial information on the presence of northern bottlenose whales in deeper waters. More data are needed to determine whether this area fully encompasses important inter-canyon habitat, particularly in regard to the deeper southeastern boundary. Similarly, the full extent of important habitat for Scotian Shelf northern bottlenose whales remains unknown, and potential critical habitat areas outside the canyons and inter-canyon areas on the eastern Scotian Shelf have not been fully assessed. See DFO (2020) for further information.References:DFO. 2020. Assessment of the Distribution, Movements, and Habitat Use of Northern Bottlenose Whales on the Scotian Shelf to Support the Identification of Important Habitat. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2020/008. https://www.dfo-mpo.gc.ca/csas-sccs/Publications/SAR-AS/2020/2020_008-eng.html Fisheries and Oceans Canada. 2016. Recovery Strategy for the Northern Bottlenose Whale, (Hyperoodan ampullatus), Scotian Shelf population, in Atlantic Canadian Waters [Final]. Species at Risk Act Recovery Strategy Series. Fisheries and Oceans Canada, Ottawa. vii + 70 pp. https://www.canada.ca/en/environment-climate-change/services/species-risk-public-registry/recovery-strategies/northern-bottlenose-whale-scotian-shelf.html Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. In press. Distribution, movements, and habitat use of northern bottlenose whales (Hyperoodon ampullatus) on the Scotian Shelf. DFO Can. Sci. Advis. Sec. Res. Doc. [https://publications.gc.ca/collections/collection_2022/mpo-dfo/fs70-5/Fs70-5-2021-074-eng.pdf]Cite this data as: Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. Data of: Northern bottlenose whale important habitat in inter-canyon areas on the eastern Scotian Shelf. Published: June 2021. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/9fd7d004-970c-11eb-a2f3-1860247f53e3

Landscape Units (Subdivisions) were developed as a part of the 2002 Northern Caribou Strategy and are used for landscape level planning within Wildlife Habitat Area 5-086. For details please see: [Apps, C. D., T. A. Kinley, and J. A. Young. 2001. Multi-scale habitat modeling for woodland caribou in the Itcha, Ilgachuz, and Rainbow mountains of west-central British Columbia. Wildlife Section, Ministry of Water, Land and Air Protection, Williams Lake, British Columbia, Canada.](http://www.env.gov.bc.ca/cariboo/env_stewardship/wildlife/inventory/caribou/northcar/hmi/hsi06-01.pdf)

Speckled Dace (Rhinichthys osculus) are listed under the Species at Risk Act (SARA) as endangered. These fresh water fish, of the family Cyprinidae, are found in Canada only in the Kettle Valley of British Columbia. Proposed critical habitat was based on minimum viable population analysis and assumed densities of fish. From October 19th to the 22nd of 2015, night time pole seining surveys were conducted to enumerate Speckled Dace in proposed critical habitat on the West Kettle River; one of three rivers containing Speckled Dace. The estimated population abundance of Speckled Dace within the survey area was 8,978 (6,143-11,814), however only 1,014 of these are estimated to be adults.

DescriptionConservation of marine biodiversity requires understanding the joint influence of ongoing environmental change and fishing pressure. Addressing this challenge requires robust biodiversity monitoring and analyses that jointly account for potential drivers of change. Here, we ask how demersal fish biodiversity in Canadian Pacific waters has changed since 2003 and assess the degree to which these changes can be explained by environmental change and commercial fishing. Using a spatiotemporal multispecies model based on fisheries independent data, we find that species density (number of species per area) and community biomass have increased during this period. Environmental changes during this period were associated with temporal fluctuations in the biomass of species and the community as a whole. However, environmental changes were less associated with changes in species’ occurrence. Thus, the estimated increases in species density are not likely to be due to environmental change. Instead, our results are consistent with an ongoing recovery of the demersal fish community from a reduction in commercial fishing intensity from historical levels. These findings provide key insight into the drivers of biodiversity change that can inform ecosystem-based management.The layers provided represent three community metrics: 1) species density (i.e., species richness), 2) Hill-Shannon diversity, and 3) community biomass. All layers are provided at a 3 km resolution across the study domain for the period of 2003 to 2019. For each metric, we provide layers for three summary statistics: 1) the mean value in each grid cell over the temporal range, 2) the probability that the grid cell is a hotspot for that metric, and 3) the temporal coefficient of variation (i.e., standard deviation/mean) across all years.Methods:The analysis that produced these layers is presented in Thompson et al. (2022). The analysis uses data from the Groundfish Synoptic Bottom Trawl Research surveys in Queen Charlotte Sound (QCS), Hecate Strait (HS), West Coast Vancouver Island (WCVI), and West Coast Haida Gwaii (WCHG) from 2003 to 2019. Cartilaginous and bony fish species caught in DFO groundfish surveys that were present in at least 15% of all trawls over the depth range in which they were caught were included. This depth range was defined as that which included 95% of all trawls in which that species was present. The final dataset used in our analysis consisted of 57 species (Table S1 in Thompson et al. 2022).The spatiotemporal dynamics of the demersal fish community were modeled using the Hierarchical Modeling of Species Communities (HMSC) framework and package (Tikhonov et al. 2021) in R. This framework uses Bayesian inference to fit a multivariate hierarchical generalized mixed model. We modeled community dynamics using a hurdle model, which consists of two sub models: a presence-absence model and a biomass model that is conditional on presence. Our list of environmental covariates included bottom depth, bathymetric position index (BPI), mean summer tidal speed, substrate muddiness, substrate rockiness, whether the trawl was inside or outside of the ecosystem-based trawling footprint, and survey region (QCS & HS vs. WCVI & WCHG)), mean summer near-bottom temperature deviation, mean summer near-bottom dissolved oxygen deviation, mean summer cross-shore and along-shore current velocities near the seafloor, mean summer depth-integrated primary production, and local-scale commercial fishing effort.Layers are provided for three community metrics. All metrics should be interpreted as the value that would be expected in the catch from an average tow in the Groundfish Synoptic Bottom Trawl Research Surveys taken in a given 3 km grid cell. Species density (sometimes called species richness) should be interpreted as the number of the 57 species that would be caught in a trawl. Hill-Shannon diversity is a measure of diversity that gives greater weight to communities where biomass is spread equally across species. Community biomass is the total biomass across all 57 species that would be expected to be caught per square km in an average tow. Data Sources:Research data was provided by Pacific Science's Groundfish Data Unit for research surveys from the GFBio database between 2003 and 2019 that occurred in four regions: Queen Charlotte Sound, Hecate Strait, West Coast Haida Gwaii, and West Coast Vancouver Island. Our analysis excludes species that are rarely caught in the research trawls and so our estimates would not include the occurrence or biomass of these rare species.Commercial fishing data was accessed through a DFO R script detailed here: https://github.com/pbsassess/gfdata. Local scale commercial fishing effort was calculated from this data. The substrate layers were obtained from a substrate model (Gregr et al. 2021). The oceanographic layers (bottom temperature, dissolved oxygen, tidal and circulation speeds, primary production) were obtained from a hindcast simulation of the British Columbia continental margin (BCCM) model (Peña et al. 2019).Uncertainties:Species that are not well sampled by the trawl surveys may not be accurately estimated by our model. The model did not include spatiotemporal random effects, which likely underestimates spatiotemporal variability in the region. It is also important to underline covariate uncertainty and model uncertainty. The hotspot estimates provide one measure of model uncertainty/certainty.

Effective fisheries and habitat management processes require knowledge of the distribution of areas of high ecological or biological significance. On the Scotian Shelf and Slope, a number of benthic ecologically or biologically significant areas consisting of habitat-forming species such as sponges and deep-water corals have been identified. However, knowledge of their spatial distribution is largely based on targeted surveys that are limited in their spatial extent. We used a species distribution modelling approach called random forest (RF) to predict the probability of occurrence and biomass of sponges, sea pens, and large and small gorgonian corals across the entire spatial extent of Fisheries and Oceans Canada’s (DFO) Maritimes Region. We also modelled the rare sponge Vazella pourtalesi, which forms the largest known aggregation of its kind on the Scotian Shelf. We utilized a number of data sources including DFO multispecies trawl catch data and in situ benthic imagery observations. Most models had excellent predictive capacity with cross-validated Area Under the Receiver Operating Characteristic Curve (AUC) values ranging from 0.760 to 0.977. Areas of suitable habitat were identified for each taxon and were contrasted against their known distribution and when applicable, the location of closure areas designated for their protection. Generalized additive models (GAMs) were developed to predict the biomass distribution of each taxonomic group and serve as a comparison to the RF models. The RF and GAM models provided comparable results, although GAMs provided superior predictions of biomass along the continental slope for some taxonomic groups. In the absence of data observations, the results of this study could be used to identify the potential distribution of sensitive benthic taxa for use in fisheries and habitat management applications. These results could also be used to refine significant concentrations of these taxa as identified through the kernel density analyses.Cite this data as: Beazley, Lindsay; Kenchington, Ellen; Murillo-Perez, Javier; Lirette, Camille; Guijarro-Sabaniel, Javier; McMillan, Andrew; Knudby, Anders (2019). Species Distribution Modelling of Corals and Sponges in the Maritimes Region for Use in the Identification of Significant Benthic Areas. Published July 2023. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/356e92f3-5bf3-4810-98b1-3e10cd7742aa

Greenland Sharks (Somniosus microcephalus) are estimated to have the highest longevity of any invertebrate (392 ± 120 years), making bycatch a significant concern (Nielsen et al. 2016). However, in the Newfoundland and Labrador (NL) region, accurate estimates of bycatch are not often available for the species (Simpson et al. 2021). To address this, species distribution models (SDMs) were generated to delineate habitat suitability for the species throughout the NL region in order to identify areas where a higher rate of bycatch is expected to occur.Observations of Greenland shark bycatch recorded by At-Sea Observers (ASOs) in NL (1983 – 2019), Spain (1999 – 2017), and by the Northwest Atlantic Fisheries Organization (NAFO) Secretariat (2014 – 2019) were compiled to generate a presence-only dataset. Multiple environmental variables were assessed for collinearity, and non-collinear variables (Bathymetry and mean monthly bottom temperature for March and November (1990 – 2015)) were retained for use in the SDM. MaxEnt (maximum entropy) software was used to model habitat suitability because it is a presence-only modelling program that is able to account for a lack of absence data by comparing the environmental conditions at occurrence locations to those at randomly selected background points. Overall, the results indicated that habitat suitability for Greenland Shark was highest in deeper waters along the shelf edge in NAFO Divisions 3OP, and the Laurentian Channel, but also extended along the edge of the Labrador shelf, the Grand Banks, and deeper areas along the continental shelf such as the Hawke Channel, Funk Island Deep, and the slopes of Saglek, Nain, and Hamilton Banks. Beyond the Economic Exclusive Zone (EEZ) and within the NAFO regulatory area (NRA), suitable habitat was also present within the Flemish Pass, and along the slope of the Flemish Cap and shelf edge in NAFO Divisions 3NO (Simpson et al. 2021). More detailed information can be found in Simpson et al. 2021.References:Nielsen, J., R. B. Hedeholm, J. Heinemeier, P. G. Bushnell, J. S. Christiansen, J. Olsen, C. B. Ramsey, R. W. Brill, M. Simon, K. F. Steffensen, J. F. Steffensen. 2016. Eye lens radiocarbon reveals centuries of longevity in the Greenland shark (Somniosus microcephalus). Science 353 (6300):702-704Simpson, M. R., Gullage, L., Konecny, C., Ollerhead, N., Treble, M.A., Nogueira, A., González-Costas, F. 2021. Spatial-temporal variation in Greenland shark (Somniosus microcephalus) bycatch in the NAFO Regulatory Area. NAFO SCR Doc. 21/028

The Observed Habitat Polygons show the various types of particular habitat that have been observed or calculated by biologists as well as an expectation of different species found in the habitats. Each bioarea has several observed habitats, and it is the combination of the bioarea and habitat observed number that identifies each unique observed habitat.