As part of the Musquash Marine Protected Area (MPA) Monitoring Plan, this project was implemented to establish a baseline for infaunal biodiversity for this area. Data collection began in 2010 and contributed monitoring information for productivity, biodiversity, and habitat indicators within the Musquash Harbour. A 1500 cubic centimetre ponar benthic grab was deployed at 30 random stations distributed over three strata (channel, intertidal and subtidal). Samples were to be collected up to three times per year to account for seasonality and annual variation. Once collected the benthic samples were analyzed for changes in grain size, carbon content (Loss on ignition), species abundance/diversity and biomass.Cite this data as: Cooper, J.A., and Blanchard, M. Musquash Benthic Infauna. Published in September 2023. Coastal Ecosystem Science Division, Fisheries and Oceans Canada, St. Andrews, NB.For additional information please see:Cooper, A., Abbott, M., Allard, K., Chang,, B., Courtenay, S., Doherty, P., Greenlaw, M., Ipsen, E., Koropatnick, T., Law, B., Losier, R., Martin, J., Methven, D., and Page, F. 2014. Musquash Estuary Marine Protected Area (MPA): Data Assessment. DFO Can. Sci. Advis. Sec. Res. Doc. 2014/001. v + 57 p.Cooper, J.A., Jones, O. and Blanchard, M. 2023. Review of Baseline Monitoring within the Musquash Estuary Marine Protected Area. DFO Can. Sci. Advis. Sec. Res. Doc. 2023/028. viii + 56 p.Oceans and Coastal Management Division (OCMD). 2015. Musquash Estuary Marine Protected Area Ecosystem Monitoring Plan (2014-2019). Can. Manuscr. Rep. Fish Aquat. Sci. 3077: v+17 pp.DFO. 2022. 2021 Review of Musquash Marine Protected Area Monitoring. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2022/016.

Catch, effort, location (latitude and longitude), and associated biological data from the Eulachon Migration Study Bottom Trawl surveys - South on the coast of British Columbia.Introduction:The Eulachon Migration Study Bottom Trawl survey - South (Eul-S) is part of the in the Eulachon Migration Study Bottom Trawl survey series and took place on the coast of British Columbia. The other survey in this series is the Eulachon Migration Study Bottom Trawl survey – North (Eul-N).The Eulachon Migration Study Bottom Trawl survey - South (Eul-S) was conducted monthly from October 2017 to March 2018 with an additional trip in January 2019 and was funded by the Fisheries and Oceans Canada (DFO) National Rotational Survey Fund.The objective of this survey was learn about the distribution, ecology, and migration times of Eulachon into the Fraser River by observing their spatial and temporal occurrence and biological condition over a wide survey region and over several months. This survey follows a random block design in a targeted depth range between 80 – 200 metres. The sampling units are 2 km by 2 km blocks. Fishing was conducted using the Canadian Coast Guard Research Vessel Neocaligus to tow an American shrimp trawl net (Cantrawl Nets Ltd., Richmond, BC). The horizontal opening of the polypropylene net was estimated to be 34 to 37 feet (10 to 11 m), while the center of the opening had a vertical height of approximately 7 to 9 feet (2 to 3 m). A 0.4” (10 mm) liner was used in the codend. The net was configured with roller gear and 72” (1.8 m) Thyboron Type 2 trawl doors. Tow duration was typically 20 minutes. The standard hours of fishing were 0700 to 1700 hours, depending on sunrise and sunset in winter months.The Eulachon Migration Study Bottom Trawl survey – South was conducted by the Department of Fisheries and Oceans Canada (DFO). The area the survey covered included the Strait of Georgia, Juan de Fuca Strait, and Haro Strait in Pacific Fishery Management areas (PFMA’s) 17-20, 28, 29, and 121.Effort:This table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught.Catch:This table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).Biology:This table contains Eulachon biological data including length, sex, and weight. Information is provided on whether stomachs or teeth were examined, and whether genetics (DNA) samples were collected. Eulachon maturity data, diet data, and teeth presence data are available on request from the data contacts. Additional analyses are ongoing, including histology, fatty acid profiling, and genetic analysis; frozen heads are also available for a future aging project. In addition to the Eulachon biological data, lengths and weights were collected from American Shad. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.

Catch, effort, location (latitude and longitude), and associated biological data from the Hecate Strait Multispecies Assemblage Bottom Trawl Surveys in Hecate Strait, British Columbia.Introduction The Hecate Strait Multispecies Assemblage Bottom Trawl survey series consists of twelve surveys that were conducted from 1984 to 2003 by the Pacific Biological Station, Fisheries and Oceans Canada. The main objective of this survey series was to collect detailed catch and biological data on species assemblages in order to develop an ecological basis for mixed species stock assessment in Hecate Strait. These surveys also provided abundance indices for individual species and were a source of information on recruitment. The surveys were conducted using a combination of charter vessels and two Canadian Coast Guard Research Vessels, the R/V G.B. Reed and R/V W.E. Ricker. To determine haul locations, a grid of 19 km² (10 nautical miles²) blocks were used with an attempt made to establish one trawl site within each 18 metre depth interval within each block. The 1984 survey involved one chartered and one research vessel; all other surveys were single vessel surveys. The Hecate Strait Multispecies Assemblage Bottom Trawl survey series surveyed Pacific Fishery Management areas 4, 5, and 101 to 106. A total of 1,111 number of tows were made with a Yankee 36 trawl net. This survey series is the predecessor for the present day Hecate Strait Synoptic Bottom Trawl Survey and represents one of the longest running time series of fisheries independent groundfish surveys on the west coast.For further details about the Hecate Strait Multispecies assemblage bottom trawl survey series, a list of reports can be found in the supporting documents section.EffortThis table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught. CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location). BiologyThis table contains the available biological data for catches which were sampled. Data may include any or all of length, sex, weight, age. Different length types are measured depending on the species. Age structures are collected when possible for species where validated aging methods exist and are archived until required for an assessment; therefore, all existing structures have not been aged at this time. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.BiomassThis table contains relative biomass indices of species that have been captured in every survey of the time series. The coefficient of variation and bootstrapped 95% confidence intervals are provided for each index. The groundfish data synopsis report (Anderson et al. 2019) provides an explanation of how the relative biomass indices are derived.

A research survey on snow crab (Chionoecetes opilio) was conducted from May 2006 to May 2009 in the Bay of Ste. Marguerite near Sept-Îles, Quebec. The main objective of this survey was to assess the abundance of snow crab and benthic species associated with snow crab habitat. Only data for benthic species associated with snow crab habitat are presented in this dataset.Data were collected according to a fixed station sampling design consisting of 79 stations, between 7 to 198 meters depth. Specimens were collected using a beam trawl. The codend was lined with a small stretched mesh net in order to harvest the small individuals. The hauls were made at a target duration of 15 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library in R. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Activity_Information" file includes generic activity information, including date and location. The "occurrence_taxon" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment, contact Bernard Sainte-Marie (Bernard.Sainte-Marie@dfo-mpo.gc.ca).For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

Catch, effort, location (latitude and longitude), and associated biological data from the Eulachon Migration Study Bottom Trawl surveys - North on the coast of British Columbia.Introduction:The Eulachon Migration Study Bottom Trawl survey - North (Eul-N) is part of the in the Eulachon Migration Study Bottom Trawl survey series and took place on the coast of British Columbia. The other survey in this series is the Eulachon Migration Study Bottom Trawl survey –South (Eul-S).The Eulachon Migration Study Bottom Trawl survey - North (Eul-N) was conducted monthly from July 2018 to March 2019 and was funded by the Fisheries and Oceans Canada (DFO) National Rotational Survey Fund.The objective of this survey was to learn about the distribution, ecology, and migration times of Eulachon into the Nass and Skeena rivers by observing their spatial and temporal occurrence and biological condition over a wide survey region and over several months. This survey follows a random block design in a targeted depth range of 80 – 300 metres. The sampling units were 2 km by 2 km blocks. Fishing was conducted using the Canadian Coast Guard Research Vessel Neocaligus to tow an American shrimp trawl net (Cantrawl Nets Ltd., Richmond, BC). The horizontal opening of the polypropylene net was estimated to be 34 to 37 feet (10 to 11 m), while the center of the opening had a vertical height of approximately 7 to 9 feet (2 to 3 m). A 0.4” (10 mm) liner was used in the codend. The net was configured with roller gear and 72” (1.8 m) Thyboron Type 2 trawl doors. Tow duration was typically 5 minutes. The standard hours of fishing were 0800 to 1700 hours, depending on sunrise and sunset in winter months.The Eulachon Migration Study Bottom Trawl survey – North was conducted by the Department of Fisheries and Oceans Canada (DFO). This survey fished mainly in Chatham Sound with sets in Hecate Strait and Portland Inlet including Pacific Fishery Management areas (PFMA’s) 3, 4, and 104.Effort:This table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught.Catch:This table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).Biology:This table contains Eulachon biological data including length, sex, and weight. Information is provided on whether stomachs or teeth were examined, and whether genetics (DNA) samples were collected. Eulachon maturity data, diet data, and teeth presence data are available on request from the data contacts. Additional analyses are ongoing, including histology, fatty acid profiling, and genetic analysis; frozen heads are also available for a future aging project. In addition to the Eulachon biological data, lengths and weights were collected from American Shad.The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.

Sightings data were collected by the Mingan Island Cetacean Study (MICS) from 1980 to 2008 with annual surveys realised in the Gulf of St. Lawrence between the end of may and early november. Surveys were conducted using inflatable boats enabling the close approaches necessary to photograph and biopsy blue whales.The aim of this project was to provide additional information for designating blue whale critical habitat as required under the Canadian Species at Risk Act.For more details consult the following report:Ramp, C. and Sears, R. 2013. Distribution, densities, and annual occurrence of individual blue whales (Balaenoptera musculus) in the Gulf of St. Lawrence, Canada from 1980-2008. DFO Can. Sci. Advis. Sec. Res. Doc. 2012/157. vii + 37 p.http://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2012/2012_157-eng.htmlData of blue whale sightings, collected by the MICS, have been analysed per km of effort in 3 x 3 km grid cells in the Gulf of St. Lawrence for the 2000-2008 period.

A research survey on snow crab (Chionoecetes opilio) was conducted from July 7 to July 26, 2019 in the Estuary St. Lawrence River between Forestville, Baie-Comeau and Matane. The main objective of this survey was to assess the abundance of snow crab and benthic species associated with snow crab habitat. Only data for benthic species associated with snow crab habitat are presented in this dataset.Data were collected according to a fixed station sampling design consisting of 66 stations, between 31 and 279 meters depth. Specimens were collected using a beam trawl with a total width of 2.8 meters and a total height of 0.76 meters. The codend was lined with a 16 millimeter stretched mesh net in order to harvest the small individuals. The hauls were made at a target speed of 2 knots and a target duration of 15 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library in R. The average tow distance was approximately 25 m. The area covered at each tow was the product of the trawl opening and the distance traveled.The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Activity_Information" file includes generic activity information, including date and location. The "occurrence_taxon" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment, contact Cedric Juillet (cedric.juillet@dfo-mpo.gc.ca).For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

Catch, effort, location (latitude, longitude), relative abundance indices, and associated biological data from groundfish multi-species bottom trawl surveys in Queen Charlotte Sound.Introduction The Queen Charlotte Sound (QCS) synoptic bottom trawl survey was conducted annually from 2003 to 2005 and has since been repeated every second year on the odd-numbered years. The survey was not impacted by the COVID-19 pandemic. This survey is one of a set of long-term and coordinated surveys that together cover the continental shelf and upper slope of most of the British Columbia coast. The other surveys are the Hecate Strait (HS) survey, the West Coast Vancouver Island (WCVI) survey, the West Coast Haida Gwaii (WCHG) survey, and the Strait of Georgia (SOG) survey. The objectives of these surveys are to provide fishery independent abundance indices of all demersal fish species available to bottom trawling and to collect biological samples of selected species. The surveys follow a random depth-stratified design and the sampling units are 2 km by 2 km blocks.The synoptic bottom trawl surveys are conducted by Fisheries and Oceans Canada (DFO) in collaboration with the Canadian Groundfish Research and Conservation Society (CGRCS), a non-profit society composed of participants in the British Columbia commercial groundfish trawl fishery. The Queen Charlotte Sound and West Coast Haida Gwaii surveys are conducted under collaborative agreements, with the CGRCS providing chartered commercial fishing vessels and field technicians, while DFO provides in-kind contributions for running the surveys including personnel and equipment. The Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys are conducted by DFO and have typically taken place on a Canadian Coast Guard research vessel. Until 2016 this vessel was the CCGS W.E. Ricker. From 2021 onwards, this vessel was the CCGS Sir John Franklin. In years when a coast guard vessel has not been available, the Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys have taken place on chartered industry vessels. Data from these surveys are also presented in the groundfish data synopsis report (Anderson et al. 2019).EffortThis table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught.CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location). BiologyThis table contains the available biological data for catches which were sampled. Data may include any or all of length, sex, weight, age. Different length types are measured depending on the species. Age structures are collected when possible for species where validated aging methods exist and are archived until required for an assessment; therefore, all existing structures have not been aged at this time. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.BiomassThis table contains relative biomass indices of species that have been captured in every survey of the time series. The coefficient of variation and bootstrapped 95% confidence intervals are provided for each index. The groundfish data synopsis report (Anderson et al. 2019) provides an explanation of how the relative biomass indices are derived.

Catch, effort, location (latitude and longitude), and associated biological data from groundfish multi-species longline surveys in the southern portion of the inlets and protected waters east of Vancouver Island, British Columbia.Introduction The Inside South Hard Bottom Longline (HBLL) survey is one of a set of long-term and coordinated surveys that together cover most of the nearshore, hard-bottom habitat of coastal British Columbia. The other surveys are the Inside North HBLL survey, Outside South HBLL survey, and Outside North HBLL survey.The Inside South HBLL survey was first conducted in 2005. Starting in 2009, this survey has been repeated every second year, with the exception that no surveys were conducted in 2017, and the 2020 survey was postponed to 2021 due to the COVID-19 pandemic. The objective of these surveys is to provide fishery-independent abundance indices and associated biological data for the assessment of nearshore rockfishes and other groundfish species that live on untrawlable, hard bottom habitats. The surveys follow a random depth-stratified design and the sampling units are 2 km by 2 km blocks. The surveys use size 13/0 circle hooks, baited with frozen squid. The Inside South HBLL Survey is conducted by Fisheries and Oceans Canada (DFO) and takes place on the Canadian Coast Guard Research Vessel Neocaligus. This survey covers the southern portion of the inlets and protected waters east of Vancouver Island, including Desolation Sound, the Strait of Georgia and southern Gulf Islands in Pacific Fishery Management areas (PFMAs) 14 – 20, 28, and 29.EffortThis table contains information about the survey trips and fishing events (sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location and depth that fishing took place, soak time, hook spacing, and numbers of hooks counted. All successful fishing events are included, regardless of what was caught.CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. From 2005 to 2018, all catches are counted, and most catches are weighed; some catches are too small (“trace” amounts) or too large (e.g. very large Big Skate) to weigh. From 2020 onwards, catches are recorded as counts only. The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).BiologyThis table contains the available biological data for catches which were sampled. Data may include any or all of length, sex, weight, age. Different length types are measured depending on the species. Age structures are collected when possible for species where validated aging methods exist and are archived until required for an assessment; therefore, all existing structures have not been aged at this time. Tissue samples (usually a fin clip) may be collected for genetic (DNA) analysis for some individuals of particular species. Genetic samples may be archived until required for analysis; for more information please see the data contacts. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.

Catch, effort, location (latitude, longitude), relative abundance indices, and associated biological data from groundfish multi-species bottom trawl surveys in Hecate Strait.Introduction The Hecate Strait (HS) synoptic bottom trawl survey was first conducted in 2005, and has been repeated every second year since. The survey was not impacted by the COVID-19 pandemic. This survey is one of a set of long-term and coordinated surveys that together cover the continental shelf and upper slope of most of the British Columbia coast. The other surveys are the Queen Charlotte Sound (QCS) survey, the West Coast Vancouver Island (WCVI) survey, the West Coast Haida Gwaii (WCHG) survey, and the Strait of Georgia (SOG) survey. The objectives of these surveys are to provide fishery-independent abundance indices of all demersal fish species available to bottom trawling and to collect biological samples of selected species. The surveys follow a random depth-stratified design and the sampling units are 2 km by 2 km blocks.The synoptic bottom trawl surveys are conducted by Fisheries and Oceans Canada (DFO) in collaboration with the Canadian Groundfish Research and Conservation Society (CGRCS), a non-profit society composed of participants in the British Columbia commercial groundfish trawl fishery. The Queen Charlotte Sound and West Coast Haida Gwaii surveys are conducted under collaborative agreements, with the CGRCS providing chartered commercial fishing vessels and field technicians, while DFO provides in-kind contributions for running the surveys including personnel and equipment. The Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys are conducted by DFO and have typically taken place on a Canadian Coast Guard research vessel. Until 2016 this vessel was the CCGS W.E. Ricker. From 2021 onwards, this vessel was the CCGS Sir John Franklin. In years when a coast guard vessel has not been available, the Hecate Strait, West Coast Vancouver Island, and Strait of Georgia surveys have taken place on chartered industry vessels. Data from these surveys are also presented in the groundfish data synopsis report (Anderson et al. 2019).EffortThis table contains information about the survey trips and fishing events (trawl tows/sets) that are part of this survey series. Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey, and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location, and depth that fishing took place, as well as information that can be used to calculate fishing effort (duration) and swept area. All successful fishing events are included, regardless of what was caught.CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Most catches are weighed, but some are too small (“trace” amounts) or too large (e.g. very large Big Skate). The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).BiologyThis table contains the available biological data for catches which were sampled. Data may include any or all of length, sex, weight, age. Different length types are measured depending on the species. Age structures are collected when possible for species where validated aging methods exist and are archived until required for an assessment; therefore, all existing structures have not been aged at this time. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.BiomassThis table contains relative biomass indices of species that have been captured in every survey of the time series. The coefficient of variation and bootstrapped 95% confidence intervals are provided for each index. The groundfish data synopsis report (Anderson et al. 2019) provides an explanation of how the relative biomass indices are derived.