The layer presents the information on the distribution of eelgrass (Zostera marina) beds in James Bay, Chaleur Bay, Estuary and Gulf of St. Lawrence according to a literature review of documents produced between 1987 and 2009. Additional InformationEelgrass's inventory was produced according to a literature review of the following documents:Calderón, I. 1996. Caractérisation de la végétation et de la faune ichtyenne de la baie de Sept-Îles. Document réalisé par la Corporation de protection de l'environnement de Sept-Îles pour Pêches et Océans Canada. 26p. + 5 annexes.Comité côtier Les Escoumins à la Rivière Betsiamites. 2004. Inventaire de localisation des bancs de zostère marine dans la zone côtière Les Escoumins à la rivière Betsiamites. 9 p.Comité ZIP Côte-Nord du Golfe. 2001. Inventaire du potentiel côtier et marin de la Basse-Côte-Nord. Version préliminaire de rapport sous forme de CD-ROM, Sept-Îles, mars 2001.Comité ZIP de la rive nord de l’estuaire. 2008. Guide d’intervention en matière de protection et de mise en valeur des habitats littoraux d’intérêt de la rive nord de l’estuaire maritime (fiches 14 à 20). 8 p. + 7 fiches + annexe.Conseil Régional de l’Environnement Gaspésie et des Îles-de-la-Madeleine (2004). Inventaire et étude des bancs de zostère marine sur le territoire couvert par les comités de gestion intégrée de la zone côtière de l’Est du Québec. CONSORTIUM GAUTHIER & GUILLEMETTE - G.R.E.B.E. 1992. Description et cartographie des habitats côtiers de la Baie de Hannah jusqu'à la rivière au Castor. Rapport présenté à Hydro-Québec, Complexe Nottaway-Broadback-Rupert (NBR), Vol. 2, Annexe cartographique.Giguère, M., C. Duluc, S. Brulotte, F. Hazel, S. Pereira et M. Gaudet. 2006. Inventaire d’une population d'huître américaine (Crassostrea virginica) dans le Bassin aux Huîtres aux Îles-de-la-Madeleine en 2005. Rapport manuscrit. vi + 21 p.Grant, C. et L. Provencher, 2007. Caractérisation de l’habitat et de la faune des herbiers de Zostera marina (L.) de la péninsule de Manicouagan (Québec). Rapp. tech. can. sci. halieut. aquat. 2772 : viii + 65 p. Groupe Environnement Littoral. 1992. Complexe NBR. La zostère marine. Rapport présenté à la vice-présidence Environnement d'Hydro-Québec. 9 p. + 2 cartes.Harvey, C. et D. Brouard. 1992. Étude exploratoire du barachois de Chandler: aspects biophysiques et contamination. Rapport présenté à Environnement Canada, Direction de la protection de l'environnement région du Québec. 39 p. et annexes.Hazel, François, 2002. Données de terrain prises par F. Hazel, Septembre 2002.Ellefsen, H.-F. 2009. Communication personnelle de Hans-Frédéric Ellefsen (MPO).Jacquaz et coll. 1990. Étude biophysique de l'habitat du poisson de quatre barachois de la baie des Chaleurs.Kedney, G. et P. Kaltenback. 1996. Acquisition de connaissances et mise en valeur des habitats du banc de Portneuf. Document réalisé par la firme Pro Faune pour le Comité touristique de Rivière-Portneuf. 50 pages et 5 annexes.Lalumière, R. 1987. Répartition de la zostère marine (Zostera marina) sur la côte est de la baie James; été 1987. Rapport produit par Gilles Shooner et Associés inc. pour la Société d’énergie de la Baie James. 30 p. et annexes.Lalumière, R., L. Belzile et C. Lemieux. 1992. Étude de la zostère marine le long de la côte nord-est de la baie James (été 1991). Rapport présenté au Service écologie de la SEBJ. 31 p. + carte.Leblanc, J. 2002. Communication personnelle de Judith Leblanc (MPO).Lemieux, C. 1995. Acquisition de connaissances des habitats côtiers dans la région de Rimouski (1995). Rapport du Groupe-Conseil GENIVAR présenté au Ministère des Pêches et des Océans du Canada, Division de la Gestion de l’Habitat du Poisson, 52 pages + 2 annexes.Lemieux, C. et R. Lalumière. 1995. Acquisition de connaissances des habitats côtiers du barachois de Saint-Omer. Rap. du Groupe conseil Genivar inc. pour la DGHP, MPO, 44 pages + 3 ann.Martel, Marie-Claude, Lizon Provencher, Cindy Grant, Hans-Frédéric Ellefsen et Selma Pereira, 2009. Distribution and description of eelgrassbeds in Québec. Fisheries and Oceans Canada, Canadian Science Advisory Secretariat, Research Document 2009/050. 45p. Morin, D. 2009. Communication personnelle de Danièle Morin (MRNF).Naturam Environnement. 1999. Caractérisation biophysique, socio-économique et détermination des enjeux dans un secteur potentiel pour l’identification d’une zone de protection marine pilote: portion ouest de la MRC Manicouagan. Baie-Comeau. 311 p. Pelletier, Claudel. 2003. Communication personnelle de Claudel Pelletier, FAPAQ, lettre en date du 24 février 2003.Pereira, S. 2009. Communication personnelle de Selma Pereira (MPO).Vaillancourt, M.-A. et C. Lafontaine. 1999. Caractérisation de la Baie Mitis. Jardins de Métis et Pêches et Océans Canada. Grand-Métis. 185 p.

The Department of Fisheries established a survey of demersal juvenile Atlantic cod (*Gadus morhua*) in the nearshore (<10 m deep) in 1959. This survey aimed to characterize the distribution and abundance of juvenile Atlantic cod and was based upon Norway's Flodevigen sampling program which has been conducted continuously since 1919. A 25 m seine was used to sample juvenile Atlantic cod nursery locations on the Avalon Peninsula and Northeast coast of the island of Newfoundland in September and October. The survey continued until 1964 and became known as the Fleming survey, after original initiator Alistair Fleming. The survey was reinstated by Memorial University of Newfoundland from 1992 to 1997. Multiple tows were conducted at a subset of the original 55 Fleming sites located in St. Mary's Bay, Trepassey Bay, the Southern Shore, Conception Bay, Trinity Bay, Bonavista Bay, Gander Bay, New World Island, Fortune Harbour, Badger Bay, Halls Bay and Green Bay.This data set includes several different subsets, some of which span both Fleming Survey periods (1959-1964 and 1992-1997):I. JuvCodCatch60s90s:Catches of juvenile Atlantic cod (1959-1964, 1992-1997) from the first two consecutive tows at each site. This is a summary based on JuvCodLengths90s and FlemingSurveyData60s;II. JuvCodLength90s:Lengths of all individual juvenile Atlantic cod caught for each site (1992-1997);III. SiteEnvData60s90s:Station data for Fleming data 1992-1997;IV. FlemingSurveyData60s:Fleming survey data from 1959-1964 (note there are three record types pertaining to: station data "type 1"; general species catch data including juvenile Atlantic cod grouped by age class ("1+", "Zeroes", and "Total") "type 2; and juvenile Atlantic cod (species 223) listed in length bins "type 3"; andV. FlemingBycatch60s92to96:Bycatch data from 1959-1964 & 1992-1996 from first two tows at each site. This is a summary based partly on the FlemingSurveyData60s set.

Between 2001 and 2004 a descriptive and comparative investigation of the benthic macro-infauna in 17 pockmarks and 10 reference locations outside pockmarks in Passamaquoddy Bay-Bay of Fundy- was made. This dataset contains the locations of the grab samples for each pockmark in the study area, the taxon abundance identified in each sample and the georeferenced video transect from 2004 using a towcam- an underwater, bottom referencing vehicle on which floodlights, analogue video- and digital still-camera were mounted.For more information of the data: Wildish DJ, Akagi HM, McKeown DL, Pohle GW (2008) Pockmarks influence benthic communities in Passamaquoddy Bay, Bay of Fundy, Canada. Mar Ecol Prog Ser 357:51-66. https://www.int-res.com/abstracts/meps/v357/p51-66/

This dataset reports on lobster abundance and individual biological characteristics (size, sex, shell hardness, egg status), along with seabed substrate information, collected at various coastal sites in the Bay of Fundy, Canada. Surveys were conducted over a 40-year period between 1982 and 2021. Survey areas and SCUBA dive sites were located around Grand Manan Island, Deer Island, Campobello Island, and along the Bay of Fundy’s New Brunswick shore stretching from Passamaquoddy Bay, east to Maces Bay. One survey area was located on the Bay of Fundy’s southern shore (Nova Scotia) in the Annapolis Basin (Lawton et al. 1995). The data represent a compilation of SCUBA diving surveys (1003 belt transects) conducted directly by Fisheries and Oceans Canada (DFO) scientific SCUBA divers (1982-2019), or by contracted commercial divers funded in association with outside collaborating organizations; Department of Fisheries and Agriculture (DFA; 1990 – 1993), the Grand Manan Fishermen’s Association (GMFA; 2013-2015), and the University of New Brunswick (UNB; 2019-2021).Cite this data as: Lawton P, Dinning K, Rochette R, Teed L. American lobster (Homarus americanus) abundance and biological characteristics collected from SCUBA dive surveys in the Bay of Fundy from 1982-2021. Published August 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B.For additional information please see:Campbell, A. 1990. Aggregations of berried lobsters (Homarus americanus) in shallow waters off Grand Manan, eastern Canada. DFO Can. J. Fish. Aquat. Sci. 47: 520-523.Denton, C.M. 2020. Maritimes Region Inshore Lobster Trawl Survey Technical Description. DFO Can. Tech. Rep. Fish. Aquat. Sci. 3376: v + 52 p.Lawton, P. 1993. Salmon aquaculture and the traditional invertebrate fisheries of the Fundy Isles region: habitat mapping and impact definition: Cooperation Agreement on Fisheries and Aquaculture Development. Submitted by Peter Lawton to the New Brunswick Department of Fisheries and Aquaculture, 84 p. Unpublished monograph. Available from Fisheries and Oceans Canada Library, Dartmouth, NS (Monographs: SH 380.2 .C2 .L39 1992).https://science-catalogue.canada.ca/record=3943769~S6Lawton, P., Robichaud, D.A., and Moisan, M. 1995. Characteristics of the Annapolis Basin, Nova Scotia, lobster fishery in relation to proposed marine aquaculture development. DFO Can. Tech. Rep. Fish. Aquat. Sci. 2035: iii + 26 p.Lawton, P., Robichaud, D.A., Rangeley, R.W., and Strong, M.B. 2001. American Lobster, Homarus americanus, population characteristics in the lower Bay of Fundy (Lobster Fishing Areas 36 and 38) based on fishery independent sampling. DFO Can. Sci. Advis. Sec. Res. Doc. 2001/093.Wentworth, C.K. 1922. A Scale of Grade and Class Terms for Clastic Sediments. The Journal of Geology 30(5): 377-392.Dinning, K.M., Lawton, P., and Rochette, R. 2025. Increased use of mud bottom by juvenile American lobsters (Homarus americanus) in Maces Bay and Seal Cove, Bay of Fundy, after three decades of population increases and predator declines. Canadian Journal of Fisheries & Aquatic Sciences 82; https://doi.org/10.1139/cjfas-2023-0312

Layer that includes the known information on harbor seal breeding and feeding areas in the Saguenay Fjord, the Estuary and Gulf of St. Lawrence according to a literature review of documents produced between 1968 and 2001.Additional InformationHarbor seal breeding and feeding areas were produced according to a literature review of the following documents: Andersen, A. et M. Gagnon. 1980. Les ressources halieutiques de l'estuaire du Saint-Laurent. Rapp. can. ind. sci. halieut. aquat., 119: iv + 56 p.Communications personnelles par Fournier, C. 1999.Communications personnelles par Gosselin, J-F-. 1996.Communications personnelles par Gosselin. J.-F. 2001.Communications personnelles par Lavigueur, L. 1996.Dignard, N., R. Lalumière, A. Reed et M. Julien. 1991. Les habitats côtiers du nord-est de la Baie James. Publication hors-série no. 70. Environnement Canada, Service canadien de la faune. 30 p. + carte.Enquête auprès des pêcheurs et agents du MEF et du MPO. 1995.Mansfield, A. W. 1968. Seals and walruses. In: Beals, C.S., ed. Science, History and Hudson Bay. Vol. 1. Ottawa: Queen’s Printer. 501 p.

Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake - St. Andrews 2011 data is part of the publication Bay Scale Assessment of Nearshore Habitat Bras d'Or Lakes. A history of nearshore benthic surveys of Bras d’Or Lake from 2005 – 2011 is presented. Early work utilized drop camera and fixed mount sidescan. The next phase was one of towfish development, where camera and sidescan were placed on one platform with transponder-based positioning. From 2009 to 2011 the new towfish was used to ground truth an echosounder. The surveys were performed primarily in the northern half of the lake; from 10 m depth right into the shallows at less than 1 m. Different shorelines could be distinguished from others based upon the relative proportions of substrate types and macrophyte canopy. The vast majority of macrophytes occurred within the first 3 m of depth. This zone was dominated by a thin but consistent cover of eelgrass (Zostera marina L.) on almost all shores with a current or wave regime conducive to the growth of this plant. However, the eelgrass beds were frequently in poor shape and the negative impacts of commonly occurring water column turbidity, siltation, or possible localized eutrophication, are suspected. All survey data were placed into a Geographic Information System, and this document is a guide to that package. The Geographic Information System could be used to answer management questions such as the placement and character of habitat compensation projects, the selection of nearshore protected areas or as a baseline to determine long term changes.,Vandermeulen, H. 2016. Video-sidescan and echosounder surveys of nearshore Bras d’Or Lake. Can. Tech. Rep. Fish. Aquat. Sci. 3183: viii + 39 p.Cite this data as: Vandermeulen H. Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake - St. Andrews 2011. Published May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.

Towfish (sidescan and video) and echo sounder surveys were utilized to examine bottom type and macrophyte cover within the area of two coastal marine finfish aquaculture sites, one in New Brunswick (Welch Cove) and one in Nova Scotia (Jordan Bay). Both towfish and echo sounder data could be used independently of one another. However, the towfish data were very useful for ground truthing echo sounder based classifications. All survey data were placed into a GIS which could be used to answer management questions such as the placement of cages at sites, benthic impacts and baseline conditions to determine long term changes.Cite this data as: Vandermeulen H. Data of: Exploratory Video-Sidescan and Echosounder Survey of Welch Cove. Published: June 2021. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/0083e317-8bb5-492a-8348-c021e183f307

Bay and Channel (fresh and marine) features and associated names

A research survey on snow crab (Chionoecetes opilio) was conducted from May 2006 to May 2009 in the Bay of Ste. Marguerite near Sept-Îles, Quebec. The main objective of this survey was to assess the abundance of snow crab and benthic species associated with snow crab habitat. Only data for benthic species associated with snow crab habitat are presented in this dataset.Data were collected according to a fixed station sampling design consisting of 79 stations, between 7 to 198 meters depth. Specimens were collected using a beam trawl. The codend was lined with a small stretched mesh net in order to harvest the small individuals. The hauls were made at a target duration of 15 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library in R. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Activity_Information" file includes generic activity information, including date and location. The "occurrence_taxon" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment, contact Bernard Sainte-Marie (Bernard.Sainte-Marie@dfo-mpo.gc.ca).For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

Bay-scale empirical demonstrations of how bivalve aquaculture alters plankton composition, and subsequently ecological functioning and higher trophic levels, are lacking. Temporal, inter- and within-bay variation in hydrodynamic, environmental, and aquaculture pressure limit efficient plankton monitoring design to detect bay-scale changes and inform aquaculture ecosystem interactions. Here, we used flow cytometry to investigate spatio-temporal variations in bacteria and phytoplankton (< 20 µm) composition in four bivalve aquaculture embayments. We observed higher abundances of bacteria and phytoplankton in shallow embayments that experienced greater freshwater and nutrient inputs. Depleted nutrient conditions may have led to the dominance of picophytoplankton cells, which showed strong within-bay variation as a function of riverine vs freshwater influence and nutrient availability. Although environmental forcings appeared to be a strong driver of spatio-temporal trends, results showed that bivalve aquaculture may reduce near-lease phytoplankton abundance and favor bacterial growth. We discuss aquaculture pathways of effects such as grazing, benthic-pelagic coupling processes, and microbial biogeochemical cycling. Conclusions provide guidance on optimal sampling considerations using flow cytometry in aquaculture sites based on embayment geomorphology and hydrodynamics.Cite this data as: Sharpe H, Lacoursière-Roussel A, Barrell J (2024). Monitoring bay-scale bivalve aquaculture ecosystem interactions using flow cytometry. Version 1.2. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=monitoring_bay-scale_bivalve_aquaculture_ecosystem_interactions_using_flow_cytometry&v=1.2