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We have found 26 datasets for the keyword "jaxa". You can continue exploring the search results in the list below.
Datasets: 101,362
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26 Datasets, Page 1 of 3
Canada’s PALSAR-2 L-band dual-polarized radar backscatter summer composite, circa 2020
This data publication contains an optimized mosaic of PALSAR-2 L-band dual-polarized radar backscatter summer composite for the year 2020 across Canada (excluding the Arctic Archipelago). Its primary purpose is to offer the best possible L-band radar summer-like composite mosaic mostly tailored for i) classifying natural treed or shrubby vegetation covers, and ii) estimating their structural attributes, such as height and biomass. ## Methodology:This product is based on the freely available and open dataset of yearly JAXA Global PALSAR-2/PALSAR Mosaics ver. 1 (hereafter JAXA GPM v1). They were generated by the Japanese space agency (JAXA) using PALSAR L-band synthetic aperture radar sensors aboard the Advanced Land Observing Satellites (ALOS): ALOS-2 PALSAR-2 (2015 to 2020) and ALOS PALSAR (2007 to 2010). JAXA GPM v1 provide yearly mosaics orthorectified and slope-corrected L-band HH- and HV-polarized gamma naught (γ°) backscatter amplitude with 25-m pixel size and scaled as 16-bit data (Shimada et al. 2014). JAXA GPM v1 are accessible as a Google Earth Engine image collection at https://developers.google.com/earth-engine/datasets/catalog/JAXA_ALOS_PALSAR_YEARLY_SAR.The yearly 2007 to 2020 JAXA GPM v1 dataset across Canada underwent a post-processing and compositing methodology implemented in Google Earth Engine, as detailed in Pontone et al. 2024 and summarized in a pdf “Readme” file provided with the dataset. In summary, the method involves these three steps: 1. Post-processing of yearly γ° HH and HV datasets: handling data gaps, filtering speckle noise, and generating two radar vegetation indices, the HV/HH ratio (HVHH) and the radar forest degradation index (RFDI).2. Temporal compositing from 2015 to 2020 of post-processed yearly γ° PALSAR-2 HH, HV, HVHH, and RFDI backscatter data aimed to i) address data gaps and ii) mitigate detrimental backscatter fluctuations across ALOS-2 orbits resulting from numerous out-of-summer acquisitions.3. Generating the final PALSAR-2 L-band γ° radar backscatter summer composite circa 2020 raster files. ## Performance et limitations:The resulting Canada-wide, excluding the Arctic Archipelago, gap-free and radiometrically optimized mosaic of circa 2020 PALSAR-2 L-band backscatter summer composite was found significantly improved compared to the single-year 2020 JAXA GPM v1 mosaic, particularly in northern boreal Canada (Pontone et al. 2024). However, this product should be considered as a summer-like composite and users should be mindful of the following known limitations: • In northwestern Canada, there were often minimal to no summer PALSAR-2 acquisitions, resulting in residual backscatter fluctuations across ALOS-2 orbits.• The composite may exhibit patchy radiometric noise in areas that experienced major disturbances (fires, harvesting) between 2015 and 2020 despite they were accounted for in our compositing methodology.• This product is deemed less performant, or possibly not suitable, for i) characterizing highly dynamic land cover types such as grasslands, croplands, and water bodies, or for ii) estimating soil and/or vegetation moisture content for the year 2020.As a final note, JAXA released an improved GPM ver. 2 that was not available at the time of this study. A preliminary analysis shows that the circa 2020 PALSAR-2 composite product still seems to outperform the 2020 JAXA GPM v2 in northern Canada. ## Additional Information on Dataset: This dataset comprises four raster geotiff files of circa 2020 L-band PALSAR-2 summer temporal composites as mosaics of orthorectified and radiometrically slope corrected dual-polarized HH and HV gamma naught (γ°) backscatter amplitude, along with two radar vegetation indices (HVHH, RFDI), all scaled as 16-bit Digital Number (DN) values with 30-m pixel size in Lambert conformal conic projection. An additional 8-bit RGB quick-view file is also provided. A companion pdf ”Readme” file provides further details about these geotiff files and equations to convert DN values to γ° absolute intensity values. ## Dataset Citation: Beaudoin, A., Villemaire, P., Gignac, C., Tolszczuk, S., Guindon, L., Pontone, N., Millard, C. (2024). Canada’s PALSAR-2 dual-polarized L-band radar summer backscatter composite, circa 2020. Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Quebec, Canada. https://doi.org/10.23687/8ec4ee78-9240-4bd0-9c97-d3a27829e209In addition, please provide credits to the Japanese space agency JAXA with the mention “Original Global PALSAR-2/PALSAR Mosaics v1 provided by JAXA (©JAXA)” ## Publication Reference for Product Development and Use in Wetland Mapping: Pontone, N., Millard, K., Thompson, D., Guindon, L., Beaudoin, A. (2024). A hierarchical, Multi-Sensor Framework for Peatland Sub-Class and Vegetation Mapping Throughout the Canadian Boreal Forest. Remote Sensing for Ecology and Conservation (accepted for publication).## Cited reference: Shimada, M., Itoh, T., Motooka, T., Watanabe, M., Tomohiro, S., Thapa, T., Lucas, R. (2014). New Global Forest/Non-Forest Maps from ALOS PALSAR Data (2007-2010). Remote Sensing of Environment, 155, pp. 13-31. https://doi.org/ 10.1016/j.rse.2014.04.014
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker Mifish (12S)
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker COI
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b
Regional Deterministic Wave Prediction System - Lake Erie
The Regional Deterministic Wave Prediction System (RDWPS) produces wave forecasts out to 48 hours in the future using the third generation spectral wave forecast model WaveWatch III® (WW3). The model is forced by the 10 meters winds from the High Resolution Deterministic Prediction System (HRDPS). Over the Great Lakes, an ice forecast from the Water Cycle Prediction System of the Great Lakes (WCPS) is used by the model to attenuate or suppress wave growth in areas covered by 25% to 75% and more than 75% ice, respectively. Over the ocean, an ice forecast from the Regional Ice Ocean Prediction System (RIOPS) is used: in the Northeast Pacific, waves propagate freely for ice concentrations below 50%, above this threshold there is no propagation; in the Northwest Atlantic the same logic is used as in the Great Lakes. Forecast elements include significant wave height, peak period, partitioned parameters and others. This system includes several domains: Lake Superior, Lake Huron-Michigan, Lake Erie, Lake Ontario, Atlantic North-West and Pacific North-East.
Dynamic Radar Composite Coverage
Radar coverage is provided to dynamically display the zones covered by the radars every 6 minutes, and to provide information on the availability (or not) of the contributing radars as well as on the areas of overlap.
Ontario Hydro Network - Shoreline
The Ontario Hydro Network (OHN) is a provincial medium scale originating from data with regional scales of 1: 10,000 in Southern Ontario, 1: 20,000 in Northern Ontario and 1: 50,000 in the Far North. The shoreline is taken from the OHN - Waterbody data class. This data is used for cartographic purposes and web mapping services. This product requires the use of geographic information system (GIS) software. [Ontario Hydro Network (OHN) User Guide (Word)](https://www.sdc.gov.on.ca/sites/MNRF-PublicDocs/EN/CMID/OHN%20-%20UserGuide.docx)
Reproductive Ecology of Zostera marina L. (Eelgrass) Across Varying Environmental Conditions
Sexual reproduction is critical to the resilience of seagrass beds impacted by habitat degradation or environmental changes, as robust seed banks allow new shoots to establish each year. Reproductive strategies of seagrass beds range on a continuum from strictly annual to perennial, driven by local environmental conditions. We examined the reproductive dynamics of Zostera marina beds at six sites on the Atlantic coast of Canada to characterize how life history strategies are shaped by the surrounding environment. Sites were categorized as wave protected and wave exposed, where protected sites were warm, shallow, with little water movement and muddy sediments, and exposed sites were either shallow or deep, with cooler water and sandy sediments. While mixed life history strategies were evident at all sites, protected eelgrass beds exhibited both the highest and lowest sexual reproductive effort relative to exposed beds. These beds regularly experienced thermal stress, with higher temperature range and extended warm water events relative to exposed beds. The development of reproductive shoots were similar across sites with comparable Growing Degree-days at the beginning and end of anthesis, but the First Flowering Date was earlier at the protected warmer sites relative to exposed sites. With different reproductive shoot density among sites, seed production, seed retention, and seedling recruitment also varied strongly. Only one site, located in a warm, shallow and protected lagoon, contained a mixed life history population with a high reproductive effort (33.7%), strong seed bank, and high seedling establishment. However, a primarily perennial population with the lowest reproductive effort (0.5%) was identified at the warmest site, suggesting that conditions here could not support high sexual reproduction. Robustness of seed banks was strongly linked to reproductive shoot density, although the role of seed retention, germination and seedling survival require further investigation. Our study provides insights into one key aspect of seagrass resilience, and suggests that resilience assessments should include reproductive shoot density to inform their management and conservation.Cite this data: Vercaemer B. and Wong M. Reproductive ecology of Zostera marina L. (eelgrass) across varying environmental conditions. Published: May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/56cfea6f-aeca-47ed-94ab-c519d9e63c91
Time stamps
Location of timestampers.attributs:ID - Unique IdentifierNo - Number**This third party metadata element was translated using an automated translation tool (Amazon Translate).**
Mobile gear sentinel fisheries program - northern Gulf of St. Lawrence
In place since fall 1994, the sentinel fisheries program is the result of a collaboration between Fisheries and Oceans Canada (DFO) and Quebec and Newfoundland commercial fishermen's associations. Under this program, contracts are awarded by tender to fishermen’s associations to carry out fishing activities according to scientific protocols developed by DFO. The main objective of this survey is to collect data that will be used to calculate abundance indices for various fish stocks, including cod, Greenland halibut, Atlantic halibut and rockfish.Description of mobile surveyThe mobile gear sentinel fisheries of the northern Gulf of St. Lawrence are conducted in the sub-division 3Pn and the divisions 4R, 4S and the northern part of the division 4T of the Northwest Atlantic Fisheries Organization (NAFO). This program follows a stratified random survey plan according to depth strata, NAFO divisions and the type of substrate at the bottom. A standard tow is 30 minutes long and made at a speed of 2.5 knots. The fishing gear is a 300 Star Balloon trawl mounted on a Rock Hopper footgear. The trawl mesh size is 145 mm with a liner of 40 mm in the codend. Unless conditions at sea compromise safety during fishing activity, a retaining cable must be used to standardize the horizontal opening between vessels and the various depths fished. Data are collected by observers at sea or by technicians.The data contained in this program are divided into 4 different projects.-The summer series, carried out during the month of July-The fall series, which covers the period from 1995 to 2002-The winter series, to study the mixing between the different stocks-The CRP (Cod reproductive potential) series, which targets the reproductive potential.DataFor each trait, the total catch is sorted and weighed for each species. The number of individuals caught for each unmeasured fish species is noted. Biological data such as length, weight (sampled, per individual, gonad, liver and stomach), age, sex and maturity migth then be collected on a subsample of many species such as Atlantic halibut, Greenland halibut, lumpfish and Atlantic cod, using a variety of protocols. The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual, a “Freql” file containing the length frequency of fish.The data collected as part of this program is available below. It is important to note, however, that 1) only traits deemed successful have been retained; 2) historical data may contain inaccuracies; 3) the most recent survey is not available for validation purposes.
Global Deterministic Wave Prediction System
The Global Deterministic Wave Prediction System (GDWPS) produces wave forecasts out to 120 hours in the future using the third generation spectral wave forecast model WaveWatch III® (WW3). The model is forced by the 10 meters winds and the ice concentration from the Global Deterministic Prediction System (GDPS). The ice concentration is used by the model to attenuate wave growth in areas covered by 25% to 75% ice and to suppress it for concentration above 75%. Forecast elements include significant wave height, peak period and primary swell height, direction and period.
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