This record contains a comprehensive synthesis of previously published highly branched isoprenoid (HBI) results, providing a quantitative spatial and temporal assessment of carbon partitioning within the Arctic marine ecosystem and validating estimates of sea-ice particulate organic carbon (iPOC) values as quantitative predictors of ice algal carbon in Arctic food webs.This publication was a collaborative effort with the following contributors: David Yurkowski (Fisheries and Oceans Canada), Lisa Loseto (Fisheries and Oceans Canada), Steve Ferguson (Fisheries and Oceans Canada), Bruno Rosenberg (Fisheries and Oceans Canada), C.W. Koch (Natural History Museum, London, UK; University of Maryland Center for Environmental Science, Maryland, US); T.A. Brown (Scottish Association for Marine Science, Oban, Scotland); R. Amiraux (Centre for Earth Observation Science, University of Manitoba, Canada); C. Ruiz-Gonzalez (Scottish Association for Marine Science, Oban, Scotland); M. Maccorquodale (Scottish Association for Marine Science, Oban, Scotland); G. Yunda-Guarin (Québec-Océan and Takuvik, Biology Department, Laval University, Canada); D. Kohlbach (Norwegian Polar Institute, Fram Centre, Tromsø, Norway); N.E. Hussey (Integrative Biology, University of Windsor, Ontario, Canada).

Bay and Channel (fresh and marine) features and associated names

Pelagic Marine Ecounits are intended to describe the sea surface and water column. Two variables were selected to derive pelagic ecounits:1. Salinity and 2. Stratification. The British Columbia Marine Ecological Classification (BCMEC) is a hierarchical classification that delineates Provincial marine areas into Ecozones, Ecoprovinces, Ecoregions and Ecosections. The classification was developed from previous Federal and Provincial marine ecological classifications which were based on 1:2,000,000 scale information. The BCMEC has been developed for marine and coastal planning, resource management and a Provincial marine protected areas strategy. A new, smaller level of classification termed ecounits developed using 1:250,000 scale depth, current, exposure, subsurface relief and substrate was created to verify the larger ecosections, and to delineate their boundaries. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment.

The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment. This record contains the geographic coordinates and station names from 2005 to 2008.

The objective of this project was to gather data to develop a model of the food web of the lower trophic levels of the nearshore area of the Beaufort Sea. Sampling took place from 2005 to 2008 using the CCGS Nahidik. The multidisciplinary character of the Nahidik program produced measurements of biology/ecology (primary production, phytoplankton, zooplankton, benthos, fish), chemical and physical oceanography, contaminants, geology and hydro acoustics. The data were collected in July and August of each year. The Nahidik program provided data to provide a baseline for future studies as well as an information source for environmental assessment.This record contains water chemistry data collected as part of this project including suspended nitrogen, dissolved nitrogen, suspended phosphorus, dissolved phosphorus, dissolved organic carbon, suspended carbon, chlorophyll a, and suspended silicon.

In 2009, DFO defined twelve spatial units in three of Canada's oceans to inform marine planning exercises such as the establishment of marine protected area networks. However, these bioregions cover large territories and are ecologically heterogeneous, especially along the coasts. The ecological regionalization presented in this report is based on existing classification systems, in particular those of Parks Canada, Environment Canada, DFO and MELCC, in addition to the unique ecological characteristics of each sub-region in terms of habitats, breeding grounds, feeding grounds, migratory routes, surface deposits, geomorphology, etc. For the Quebec region, a total of 13 sub-ecoregions have been identified. The analyses leading to these sub-ecoregions are based both on a description of terrestrial ecosystems adjacent to the coast and on a marine description. Consultation with experts in marine biology and conservation helped refine our analyses and conclusions. Data presented here are the limit of the 13 ecoregions made from this work. A technical report is available for more details : Narancic, B. et Gendreau, Y. 2022. The ecological regionalization of coastal habitat of the Estuary and Gulf of St. Lawrence. Tech. Rep. Fish. Aquat. Sci. 0000 :vii + 27p.

The layer presents the information on the distribution of eelgrass (Zostera marina) beds in James Bay, Chaleur Bay, Estuary and Gulf of St. Lawrence according to a literature review of documents produced between 1987 and 2009. Additional InformationEelgrass's inventory was produced according to a literature review of the following documents:Calderón, I. 1996. Caractérisation de la végétation et de la faune ichtyenne de la baie de Sept-Îles. Document réalisé par la Corporation de protection de l'environnement de Sept-Îles pour Pêches et Océans Canada. 26p. + 5 annexes.Comité côtier Les Escoumins à la Rivière Betsiamites. 2004. Inventaire de localisation des bancs de zostère marine dans la zone côtière Les Escoumins à la rivière Betsiamites. 9 p.Comité ZIP Côte-Nord du Golfe. 2001. Inventaire du potentiel côtier et marin de la Basse-Côte-Nord. Version préliminaire de rapport sous forme de CD-ROM, Sept-Îles, mars 2001.Comité ZIP de la rive nord de l’estuaire. 2008. Guide d’intervention en matière de protection et de mise en valeur des habitats littoraux d’intérêt de la rive nord de l’estuaire maritime (fiches 14 à 20). 8 p. + 7 fiches + annexe.Conseil Régional de l’Environnement Gaspésie et des Îles-de-la-Madeleine (2004). Inventaire et étude des bancs de zostère marine sur le territoire couvert par les comités de gestion intégrée de la zone côtière de l’Est du Québec. CONSORTIUM GAUTHIER & GUILLEMETTE - G.R.E.B.E. 1992. Description et cartographie des habitats côtiers de la Baie de Hannah jusqu'à la rivière au Castor. Rapport présenté à Hydro-Québec, Complexe Nottaway-Broadback-Rupert (NBR), Vol. 2, Annexe cartographique.Giguère, M., C. Duluc, S. Brulotte, F. Hazel, S. Pereira et M. Gaudet. 2006. Inventaire d’une population d'huître américaine (Crassostrea virginica) dans le Bassin aux Huîtres aux Îles-de-la-Madeleine en 2005. Rapport manuscrit. vi + 21 p.Grant, C. et L. Provencher, 2007. Caractérisation de l’habitat et de la faune des herbiers de Zostera marina (L.) de la péninsule de Manicouagan (Québec). Rapp. tech. can. sci. halieut. aquat. 2772 : viii + 65 p. Groupe Environnement Littoral. 1992. Complexe NBR. La zostère marine. Rapport présenté à la vice-présidence Environnement d'Hydro-Québec. 9 p. + 2 cartes.Harvey, C. et D. Brouard. 1992. Étude exploratoire du barachois de Chandler: aspects biophysiques et contamination. Rapport présenté à Environnement Canada, Direction de la protection de l'environnement région du Québec. 39 p. et annexes.Hazel, François, 2002. Données de terrain prises par F. Hazel, Septembre 2002.Ellefsen, H.-F. 2009. Communication personnelle de Hans-Frédéric Ellefsen (MPO).Jacquaz et coll. 1990. Étude biophysique de l'habitat du poisson de quatre barachois de la baie des Chaleurs.Kedney, G. et P. Kaltenback. 1996. Acquisition de connaissances et mise en valeur des habitats du banc de Portneuf. Document réalisé par la firme Pro Faune pour le Comité touristique de Rivière-Portneuf. 50 pages et 5 annexes.Lalumière, R. 1987. Répartition de la zostère marine (Zostera marina) sur la côte est de la baie James; été 1987. Rapport produit par Gilles Shooner et Associés inc. pour la Société d’énergie de la Baie James. 30 p. et annexes.Lalumière, R., L. Belzile et C. Lemieux. 1992. Étude de la zostère marine le long de la côte nord-est de la baie James (été 1991). Rapport présenté au Service écologie de la SEBJ. 31 p. + carte.Leblanc, J. 2002. Communication personnelle de Judith Leblanc (MPO).Lemieux, C. 1995. Acquisition de connaissances des habitats côtiers dans la région de Rimouski (1995). Rapport du Groupe-Conseil GENIVAR présenté au Ministère des Pêches et des Océans du Canada, Division de la Gestion de l’Habitat du Poisson, 52 pages + 2 annexes.Lemieux, C. et R. Lalumière. 1995. Acquisition de connaissances des habitats côtiers du barachois de Saint-Omer. Rap. du Groupe conseil Genivar inc. pour la DGHP, MPO, 44 pages + 3 ann.Martel, Marie-Claude, Lizon Provencher, Cindy Grant, Hans-Frédéric Ellefsen et Selma Pereira, 2009. Distribution and description of eelgrassbeds in Québec. Fisheries and Oceans Canada, Canadian Science Advisory Secretariat, Research Document 2009/050. 45p. Morin, D. 2009. Communication personnelle de Danièle Morin (MRNF).Naturam Environnement. 1999. Caractérisation biophysique, socio-économique et détermination des enjeux dans un secteur potentiel pour l’identification d’une zone de protection marine pilote: portion ouest de la MRC Manicouagan. Baie-Comeau. 311 p. Pelletier, Claudel. 2003. Communication personnelle de Claudel Pelletier, FAPAQ, lettre en date du 24 février 2003.Pereira, S. 2009. Communication personnelle de Selma Pereira (MPO).Vaillancourt, M.-A. et C. Lafontaine. 1999. Caractérisation de la Baie Mitis. Jardins de Métis et Pêches et Océans Canada. Grand-Métis. 185 p.

Marine Protected Areas require comprehensive monitoring to ensure objectives are achieved; however, monitoring natural ecosystems at scale is challenged by the biodiversity it aims to measure. Environmental DNA (eDNA) metabarcoding holds promise to address this monitoring challenge. We conducted paired sampling at 54 sites for fish and invertebrate assemblages in the Northwest Atlantic using groundfish trawls and eDNA metabarcoding of benthic seawater using four genetic markers (12S rRNA, 16S rRNA, 18S rRNA, and CO1). Compared to trawling, eDNA detected similar patterns of species turnover, larger estimates of gamma diversity, and smaller estimates of alpha diversity. A total of 63.6% (42/66) of fish species captured by trawling were detected by eDNA, along with an additional 26 species. Of the 24 missed detections by eDNA, 12 were inevitable as they lacked reference sequences. Excluding taxa assigned to higher than species level and those without a species name, 23.6% (17/72) of invertebrate species captured by trawling were detected by CO1, which detected an additional 98 species. We demonstrate that eDNA is capable of detecting patterns of community assemblage and species turnover in an offshore environment, emphasizing its strong potential for a non-invasive, comprehensive, and scalable tool for biodiversity monitoring supporting marine conservation programmes.Cite this data as: Jeffery, N., Rubidge, E., Abbott, C., Westfall, K., Stanley, R. (2024): Data of: eDNA metabarcoding enriches traditional trawl survey data for monitoring biodiversity in the marine environment.Published: August 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/43a91ba7-8025-4330-88db-db14022d729d

Basic biological data for all fish caught during the 2012 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level.