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We have found 612 datasets for the keyword "microsatellites". You can continue exploring the search results in the list below.
Datasets: 104,589
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612 Datasets, Page 1 of 62
Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus
Effective conservation planning relies on understanding population connectivity which can be informed by genomic data. This is particularly important for sessile species like the horse mussel (Modiolus modiolus), a key habitat-forming species and conservation priority in Atlantic Canada), yet little genomic information is available to describe horse mussel connectivity patterns. We used more than 8000 restriction-site associated DNA sequencing-derived single nucleotide polymorphisms and a panel of 8 microsatellites to examine genomic connectivity among horse mussel populations in the Bay of Fundy, along the Scotian Shelf, and in the broader northwestern Atlantic extending to Newfoundland. Despite phenotypic differences between sampling locations, we found an overall lack of genetic diversity and population structure in horse mussels in the Northwest Atlantic Ocean. All sampled locations had low heterozygosity, very low FST, elevated inbreeding coefficients, and deviated from Hardy-Weinberg Equilibrium, highlighting generally low genetic diversity across all metrics. Principal components analysis, Admixture analysis, pairwise FST calculations, and analysis of outlier loci (potentially under selection) all showed no independent genomic clusters within the data, and an analysis of molecular variance showed that less than 1% of the variation within the SNP dataset was found between sampling locations. Our results suggest that connectivity is high among horse mussel populations in the Northwest Atlantic, and coupled with large effective population sizes, this has resulted in minimal genomic divergence across the region. These results can inform conservation design considerations in the Bay of Fundy and support further integration into the broader regional conservation network.Cite this data as: Van Wyngaarden, Mallory et al. (2024). Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus. Published: May 2025. Coastal Ecosystem Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth, NS.
California Sea Lion Haulout Counts in British Columbia
The United States population of California Sea Lions (Zalophus californianus) range from southeast Alaska to the Pacific coast of central Mexico. While this population does not breed in Canada, some sub-adult and adult males migrate northwards to British Columbia during the non-breeding season with an arrival in August-October and a departure in April-May. The population in coastal BC has not been fully assessed since 1985. However, opportunistic counts suggest that California Sea Lions overwintering in BC increased in abundance from approximately 1,000 animals in the mid-2000s to several thousand individuals in more recent years.The survey targeted Steller sea lions and sites were chosen based on knowledge of historically occupied rookeries and haul-out sites with nearby areas monitored for potential shifts in distribution. The presence of California Sea Lions are based on incidental observations while surveying sites for Steller sea lion counts. This dataset contains counts that have been collected from sightings of individuals in the 2016/2017 survey season.
Odd Year Pink Salmon (Oncorhynchus gorbuscha) Conservation Units, Sites & Status
A Conservation Unit (CU) is a group of wild Pacific salmon sufficiently isolated from other groups that, if extirpated, is very unlikely to recolonize naturally within an acceptable timeframe, such as a human lifetime or a specified number of salmon generations.Holtby and Ciruna (2007) provided a framework for aggregating the five species of salmon (genus Oncorhynchus) found on Canada’s Pacific coast into species-specific CUs based on three primary characteristics: ecotypology, life history and genetics. The first stage in the description of the Conservation Units is based solely on ecology. The ecotypologies used in this framework include a combined characterization of both freshwater and near-shore marine environments, and is termed “joint adaptive zone”. The second stage of the description involves the use of life history, molecular genetics, and further ecological characterizations to group and partition the first stage units into the final Conservation Units. The result is CUs that are described through the joint application of all three axes. It is important to note that CUs are distinct from other aggregates of Pacific salmon, such as designatable units (DUs) under the Species at Risk Act or management units (MUs).CU Counting Sites:Salmon spawner enumeration data in the Pacific Region is stored and managed in the New Salmon Escapement Database (NuSEDS). The term “escapement” is used to refer to the group of mature salmon that have ‘escaped’ from various sources of exploitation, and returned to freshwater to spawn and reproduce. This data is assigned to a “Counting Site”, which may be a complete watercourse with a marine terminus, a tributary to a larger watercourse, or a defined reach within a watercourse that may or may not encompass the entire population but represents an index of the abundance of that population. CU Status:CUs form the basic unit for assessment under Canada’s Policy for the Conservation of Wild Salmon Policy (WSP) (DFO 2005). The biological status of a CU is evaluated using a number of metrics (Holt et al. 2009; Holt 2009), which indicate a WSP status zone: Red (poor status), Amber (marginal status), or Green (healthy status). A final step then incorporates all metric and status-related information into a final integrated status for each CU, along with expert commentary to support the final status determination (e.g., DFO 2012; DFO 2016). This information is used as inputs to fisheries management processes to help prioritize assessment activities and management actions.Note: CU boundaries were reviewed in 2020-2021 and have been updated from the BC Freshwater Atlas 1:50,000 scale to the BC Freshwater Atlas 1:20,000 scale. The CU boundaries were last updated in March 2023. Please be aware that CUs may be reviewed and are subject to change without notice. Please refer to Conservation Unit Review Requests-Form and Summary for a list of CU review requests that are ongoing or have been finalized.
Speckled Dace Critical Habitat Survey Data
Speckled Dace (Rhinichthys osculus) are listed under the Species at Risk Act (SARA) as endangered. These fresh water fish, of the family Cyprinidae, are found in Canada only in the Kettle Valley of British Columbia. Proposed critical habitat was based on minimum viable population analysis and assumed densities of fish. From October 19th to the 22nd of 2015, night time pole seining surveys were conducted to enumerate Speckled Dace in proposed critical habitat on the West Kettle River; one of three rivers containing Speckled Dace. The estimated population abundance of Speckled Dace within the survey area was 8,978 (6,143-11,814), however only 1,014 of these are estimated to be adults.
Pacific Salmon Designatable Units
The dataset consists of maps detailing the boundaries of the designatable units for conservation considerations as defined by the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) for species of Pacific Salmon in British Columbia and the Yukon. Designatable units represent geographical areas that support groups of individuals with a unique genetic heritage makes them discrete and evolutionarily significant units of the taxonomic species, where “significant” means that the unit is important to the evolutionary legacy of the species as a whole and if lost is unlikely to be replaced through natural dispersion.
Acquisition plans of the RADARSAT Constellation Mission
The RADARSAT Constellation is the evolution of the RADARSAT Program with the objective of ensuring data continuity, improved operational use of Synthetic Aperture Radar (SAR) and improved system reliability. The three-satellite configuration provides daily revisits of Canada's vast territory and maritime approaches, as well as daily access to 90% of the world's surface.RCM is tasked solely by the Government of Canada, to acquire data, first and foremost in support of Government of Canada services and needs. RCM data and services contributes to ensuring the safety and security of Canadians; monitoring and protecting the environment; monitoring of climate change; managing Canada’s natural resources; and stimulating innovation, research and economic development. In addition to these core user areas, there are expected to be a wide range of ad hoc uses of RADARSAT Constellation data in many different applications within the public and private sectors, both in Canada and internationally. The current data set reflects the acquisition plans that are designed to meet the RCM SAR imaging demands of the Government of Canada. These are being made available publicly in advance of the acquisitions. To meet the data needs of the Government of Canada, acquisitions may be changed without notice. After their acquisition and processing, the RCM image products listed in the current data set, will be delivered to the Earth Observation Data Management System - EODMS (https://www.eodms-sgdot.nrcan-rncan.gc.ca/index-en.html) portal of Natural Resources Canada. Users can register to the EODMS portal as public users to retrieve the RCM image products. For those requiring a greater access to RCM imagery consisting of product types or spatial resolutions not available to public users: you may apply to upgrade your public account to an ‘RCM external vetted entity’ EODMS user type account. For more information on this process, please contact the Canadian Space Agency using the information available at the following link : https://www.asc-csa.gc.ca/eng/satellites/radarsat/access-to-data/how-to-become-a-user.aspPublication frequency :I. Future acquisition plans are published every two weeks for a two-week window that starts two weeks from the publication date. As an example, acquisition plan published on April 1st covers acquisitions from April 14 to 27. The next plan is published on April 14th and covers from April 28 to May 11.II. Past acquisitions plans are published monthly and covers a period of one month from the first to the last day As an example, acquisition plan published on April 1st covers acquisition made between the March 1 and March 31. The next plan covers the month of April.
Special Area
The Special Area dataset is comprised of all the polygons that represent Special Areas in Alberta. Special Area is a rural municipality type defined under the authority of the Municipal Government Act. Special Areas were established under the Special Areas Act in 1938 due to extreme hardship of the drought years of the 1930s. The Special Areas Act of 1938 has more or less remained intact although there were some amendments in 1966 and 1985. Special Area refers to a rural area in southeast Alberta.
Diversity, Richness, and Biomass Hotspots
This geodatabase includes hotspot maps of 1) nearshore habitat richness, 2) diversity (fish and invertebrates), and 3) biomass (using catch per unit effort of fish and invertebrates), as well as two layers showing the spatial extent of the diversity and biomass hotspot analyses. Full details and methods can be found in the Rubidge et al. 2018 CSAS Research Document 2018/053 available here or at https://waves-vagues.dfo-mpo.gc.ca/Library/40759842.pdf. These data were reviewed as part of a Canadian Science Advisory Secretariat (CSAS) regional peer review process on Nov 1-2, 2017.Habitat Richness Hotspots: Because there are no systematic surveys of nearshore species that span the entire coastline of Northern Shelf Bioregion, the nearshore habitat richness hotspots were developed as a proxy for species diversity in nearshore areas. Habitat richness was calculated from eight habitat features: eelgrass, surfgrass, canopy-forming kelp, estuaries, areas of high rugosity, and hard, mixed, and soft substrate. The number of features within 1 km x 1 km planning units was counted, and hotspots were identified using the Getis-Ord G* tool in ArcGIS. Planning units with Gi_Bin values of 3 (99% confidence) were classified as habitat richness hotspots.Diversity and Biomass Hotspots: Hotspots of fish and invertebrate diversity and biomass were developed as proxies for spatial patterns of productivity in the Northern Shelf Bioregion. Diversity (Shannon diversity) and biomass (kg/hour or count/hook/hour) were calculated from DFO synoptic trawl and outside hard-bottom longline (HBLL) survey catch records. The outside HBLL survey was previously referred to as Pacific Halibut Management Area (PHMA) survey. The synoptic trawl and HBLL surveys have complementary spatial coverage, with the HBLL surveys occurring in more coastal areas (20–260 m) and the synoptic trawl surveys occurring on deeper shelf areas (50–1300 m). Hotspots were identified using the Getis-Ord G* tool in ArcGIS for five separate analyses: fish biomass (trawl), fish diversity (trawl), fish diversity (longline), invertebrate biomass (trawl), and invertebrate diversity (trawl). Using the Minimum Bounding Geometry Tool, convex hull polygons were drawn around groups of hotspot points (Gi_Bin values of 1, 2, or 3; confidence ≥90%) containing 10 or more points. The resulting polygons were then buffered by 1 km and manually edited where needed to exclude any large areas of the polygons that did not include hotspot points.
Sentinel - Invasive exotic species
This theme presents observations of invasive exotic species (IAS)transmitted and validated using the Sentinelle tool, an EEE detection system.An invasive exotic species is a plant, animal or microorganism (virus,bacteria or fungi) that are introduced outside of their natural range. Sonestablishment or its spread may pose a threat to the environment,the economy or society. The species listed are species of fauna and floraconcerning (or potentially worrying) for Quebec's biodiversity. Ellesinclude EEE present in Quebec and EEE not listed in Quebec atmonitor.**This third party metadata element was translated using an automated translation tool (Amazon Translate).**
Bird Colonies - Coastal Resource Information Management System (CRIMS)
The distribution of nesting areas for bird colonies in coastal British Columbia showing relative abundance (RA) by season and overall relative importance (RI). RI is based on project region and not on the province as a whole. Number counts for various species in the colony location are provided. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.
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