The basking shark (Cetorhinus maximus), is a species found in Atlantic Canadian waters which is mostly encountered “basking” on the surface waters and sometimes caught accidentally in commercial fisheries. One Pop-up Satellite Archival Tag (PSAT Mk10) from Wildlife Computers was applied to a single female basking shark in September 2008 on a commercial vessel to collect data on depth (pressure), temperature and ambient light level (for position estimation). The basking shark was 610 cm Total Length (curved). The tag released on the pre-programmed date 125 days after deployment. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployment can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

The white shark (Carcharodon carcharias), is a species found in Atlantic Canadian waters which is encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to white sharks from 2016 to the present to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada and the United States (Cape Cod and South Carolina) on scientific charters, typically in summer. Tag models deployed included: Mk10 (N=1), and MiniPAT (N=29) and 22 of 27 tags reported with 3 still at liberty. One individual shark returned to the location of tagging 1 year later and the physical tag was recovered. Another tag was recovered 5 years after deployment. White sharks tagged ranged in size from 259 cm to 459 cm Total Length (curved) estimated; 15 were female, 13 were male, and 2 were of unknown sex. Time at liberty ranged from 48 – 377 days and to date, only 3 tags remained on the shark for the programmed duration. Tagging of white sharks is an ongoing study and data will be updated here when it becomes available. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

The blue whale (Balaenopterus musculus) is a wide-ranging cetacean that can be found in all oceans, inhabiting coastal and oceanic habitats. In the North Atlantic, little is known about blue whale distribution and genetic structure, and if whether animals found in Icelandic waters, the Azores, or Northwest Africa are part of the same population as those from the Northwest Atlantic. In the Northwest Atlantic, seasonal movements of blue whales and habitat use, including the location of breeding and wintering areas, are poorly understood.The behaviour of remotely-monitored animals can be inferred from a time series of location data. This is because animals tend to demonstrate stochasticity in their movement paths as a result of spatial variation in environmental characteristics, such as topography or prey density (Curio 1976; Gardner et al. 1989; Turchin 1991; Wiens et al. 1993). Predators are expected to decrease travel speed and/or increase turning frequency and turning angle when a suitable resource, e.g., food patch, is encountered (Turchin 1991), otherwise known as area-restricted search (ARS). In contrast, animals in transit or travelling tend to move at faster and more regular speeds, with infrequent and smaller turning angles (Kareiva and Odell 1987; Turchin 1998).Based on satellite telemetry to track the seasonal movements of 24 blue whales from eastern Canada in 2002 and from 2010 to 2015, it was possible to estimate trajectories and locations where ARS behaviour of blue whales was inferred at a 4h time interval.To assess blue whale movements and behavior, a Bayesian switching statespace model (SSSM) was applied to Argos-derived telemetry data (Jonsen et al. 2005; Jonsen et al. 2013). An SSSM essentially estimates animal location at fixed time intervals, movement parameters and behavioral patterns.Two important sources of uncertainty can be measured separately: estimation error resulting from inaccurate observations (Argos location error) and process variability linked to the stochasticity of the movement process (behavior mode estimation) (Jonsen et al. 2003; Patterson et al. 2008).The points visible on land are the result of errors in the Argos geographic position calculation. They have been deliberately left unchanged to assess the performance of the model, which was able to clean up some positions, but not all.Lesage, V., Gavrilchuk, K., Andrews, R.D., and Sears, R. 2016. Wintering areas, fall movements and foraging sites of blue whales satellite-tracked in the Western North Atlantic. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/078. v + 38 p.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

This resource documents a dataset of epifauna occurrences collected in 2021 during The Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) program developed by the Department of Fisheries and Oceans Canada (DFO) in collaboration with university partners. The overall objective of KEBABB is to characterize the variability and trends in physical, chemical, and biological oceanographic conditions and food webs supporting fisheries in the connected ecosystems of western Baffin Bay and Lancaster Sound. In 2021, DFO expanded the KEBABB program to Barrow Strait (KEBABS-Knowledge and Ecosystem-Based Approach in Barrow Strait), a key productive area of the Tallurutiup Imanga National Marine Conservation Area. The study took place in the Eastern Canadian Arctic (mainly in Baffin Bay, Davis Strait and Barrow Strait). Sampling is done along transects at fixed stations in the study area. Catches are collected with a 1.5 m Agassiz trawl (5 mm mesh net) for 3 minutes bottom-contact time at a target speed of 1.5 knots and with a 3 m benthic beam trawl (6.4 mm mesh net) for 15 minutes bottom-contact time at a target speed of 3 knots. A total of 16 stations were sampled for epifauna in 2021 between 85-850 m depth. Epibenthic invertebrates are identified to the lowest possible taxonomic level and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The “Activité_épifaune_KEBABB_epifauna_event_en” file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The “Occurrence_épifaune_KEBABB_epifauna_en” file that contains the taxonomic occurrences.Further details on sampling can be found in the following report: Pućko, M., Charette, J., Tremblay P., Brulotte S., St-Denis B., Ciastek S., Hedges, K., Kuzyk, Z., Roy V., and Michel, C. 2022. An ecosystem-based approach in the eastern Arctic: KEBABB/S (Knowledge and Ecosystem-Based Approach in Baffin Bay/Barrow Strait) 2021 expedition report. Can. Manuscr. Rep. Fish. Aquat. Sci. 3250: viii + 58 p. https://publications.gc.ca/collections/collection_2022/mpo-dfo/Fs97-4-3250-eng.pdfUSE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

The mako shark (Isurus oxyrinchus), is a species found in Atlantic Canadian waters which is encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to mako sharks from 2011 to 2013 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial vessels, typically in summer and fall from July to October. Two types of tag models were deployed: Mk10 (N=28), and MiniPAT (N=9) and 28 of 37 tags reported (one female shark was recaptured). The mako sharks tagged ranged in size from 80 cm to 229 cm Fork Length (curved); 13 were female, 17 were male, and 7 were unknown sex. Time at liberty ranged from 0 – 185 days and 6 tags remained on for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Spiny dogfish (Squlaus acanthias), is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Historical finds of Coleophora serratella

The blue shark (Prionace glauca), is a species found in Atlantic Canadian waters which is commonly encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) and Smart Position and Temperature tag (SPOT) from Wildlife Computers were applied to blue sharks from 2004 to 2008 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial and recreational vessels from mid-August to early October, but mostly in September. A variety of tag models were deployed: PAT 4 (n=16), Mk10 (N=28), and SPOT3 (N=2) and 39 of 46 tags reported. The blue sharks tagged ranged in size from 124 cm to 251 cm Fork Length (curved); 30 were female, 15 were male and 1 was unknown sex. Time at liberty ranged from 4 – 210 days and 16 tags remained on for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Basic biological data for all fish caught during the 2012 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level.