Results from temperature preference experiments demonstrated that individual personality was consistent and repeatability. Individual preferred and maximum avoidance temperatures were significantly reduced in hypoxia compared to normoxia. Standard metabolic rate increased with temperature and body mass. Patterns of projected habitat change suggest the spatial extent of the current distribution of Carmine shiner would shift north with global warming. The understanding of habitat requirements and responses to climate will aid management and recovery efforts for this threatened species.Cite this dataset as: Enders, Eva. Data of: Carmine Shiner Conservation Physiology. Arctic and Aquatic Research Division, Fisheries and Oceans Canada, Winnipeg Manitoba. https://open.canada.ca/data/en/dataset/a6a606a4-8cdc-48e9-812c-7bdcd84840e7

BiologicEcologic ISO Feature Dataset symbolization and publication. September 5, 2017.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI.The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b

DescriptionConservation of marine biodiversity requires understanding the joint influence of ongoing environmental change and fishing pressure. Addressing this challenge requires robust biodiversity monitoring and analyses that jointly account for potential drivers of change. Here, we ask how demersal fish biodiversity in Canadian Pacific waters has changed since 2003 and assess the degree to which these changes can be explained by environmental change and commercial fishing. Using a spatiotemporal multispecies model based on fisheries independent data, we find that species density (number of species per area) and community biomass have increased during this period. Environmental changes during this period were associated with temporal fluctuations in the biomass of species and the community as a whole. However, environmental changes were less associated with changes in species’ occurrence. Thus, the estimated increases in species density are not likely to be due to environmental change. Instead, our results are consistent with an ongoing recovery of the demersal fish community from a reduction in commercial fishing intensity from historical levels. These findings provide key insight into the drivers of biodiversity change that can inform ecosystem-based management.The layers provided represent three community metrics: 1) species density (i.e., species richness), 2) Hill-Shannon diversity, and 3) community biomass. All layers are provided at a 3 km resolution across the study domain for the period of 2003 to 2019. For each metric, we provide layers for three summary statistics: 1) the mean value in each grid cell over the temporal range, 2) the probability that the grid cell is a hotspot for that metric, and 3) the temporal coefficient of variation (i.e., standard deviation/mean) across all years.Methods:The analysis that produced these layers is presented in Thompson et al. (2022). The analysis uses data from the Groundfish Synoptic Bottom Trawl Research surveys in Queen Charlotte Sound (QCS), Hecate Strait (HS), West Coast Vancouver Island (WCVI), and West Coast Haida Gwaii (WCHG) from 2003 to 2019. Cartilaginous and bony fish species caught in DFO groundfish surveys that were present in at least 15% of all trawls over the depth range in which they were caught were included. This depth range was defined as that which included 95% of all trawls in which that species was present. The final dataset used in our analysis consisted of 57 species (Table S1 in Thompson et al. 2022).The spatiotemporal dynamics of the demersal fish community were modeled using the Hierarchical Modeling of Species Communities (HMSC) framework and package (Tikhonov et al. 2021) in R. This framework uses Bayesian inference to fit a multivariate hierarchical generalized mixed model. We modeled community dynamics using a hurdle model, which consists of two sub models: a presence-absence model and a biomass model that is conditional on presence. Our list of environmental covariates included bottom depth, bathymetric position index (BPI), mean summer tidal speed, substrate muddiness, substrate rockiness, whether the trawl was inside or outside of the ecosystem-based trawling footprint, and survey region (QCS & HS vs. WCVI & WCHG)), mean summer near-bottom temperature deviation, mean summer near-bottom dissolved oxygen deviation, mean summer cross-shore and along-shore current velocities near the seafloor, mean summer depth-integrated primary production, and local-scale commercial fishing effort.Layers are provided for three community metrics. All metrics should be interpreted as the value that would be expected in the catch from an average tow in the Groundfish Synoptic Bottom Trawl Research Surveys taken in a given 3 km grid cell. Species density (sometimes called species richness) should be interpreted as the number of the 57 species that would be caught in a trawl. Hill-Shannon diversity is a measure of diversity that gives greater weight to communities where biomass is spread equally across species. Community biomass is the total biomass across all 57 species that would be expected to be caught per square km in an average tow. Data Sources:Research data was provided by Pacific Science's Groundfish Data Unit for research surveys from the GFBio database between 2003 and 2019 that occurred in four regions: Queen Charlotte Sound, Hecate Strait, West Coast Haida Gwaii, and West Coast Vancouver Island. Our analysis excludes species that are rarely caught in the research trawls and so our estimates would not include the occurrence or biomass of these rare species.Commercial fishing data was accessed through a DFO R script detailed here: https://github.com/pbsassess/gfdata. Local scale commercial fishing effort was calculated from this data. The substrate layers were obtained from a substrate model (Gregr et al. 2021). The oceanographic layers (bottom temperature, dissolved oxygen, tidal and circulation speeds, primary production) were obtained from a hindcast simulation of the British Columbia continental margin (BCCM) model (Peña et al. 2019).Uncertainties:Species that are not well sampled by the trawl surveys may not be accurately estimated by our model. The model did not include spatiotemporal random effects, which likely underestimates spatiotemporal variability in the region. It is also important to underline covariate uncertainty and model uncertainty. The hotspot estimates provide one measure of model uncertainty/certainty.

Historical finds of Adelges abietis

Sexual reproduction is critical to the resilience of seagrass beds impacted by habitat degradation or environmental changes, as robust seed banks allow new shoots to establish each year. Reproductive strategies of seagrass beds range on a continuum from strictly annual to perennial, driven by local environmental conditions. We examined the reproductive dynamics of Zostera marina beds at six sites on the Atlantic coast of Canada to characterize how life history strategies are shaped by the surrounding environment. Sites were categorized as wave protected and wave exposed, where protected sites were warm, shallow, with little water movement and muddy sediments, and exposed sites were either shallow or deep, with cooler water and sandy sediments. While mixed life history strategies were evident at all sites, protected eelgrass beds exhibited both the highest and lowest sexual reproductive effort relative to exposed beds. These beds regularly experienced thermal stress, with higher temperature range and extended warm water events relative to exposed beds. The development of reproductive shoots were similar across sites with comparable Growing Degree-days at the beginning and end of anthesis, but the First Flowering Date was earlier at the protected warmer sites relative to exposed sites. With different reproductive shoot density among sites, seed production, seed retention, and seedling recruitment also varied strongly. Only one site, located in a warm, shallow and protected lagoon, contained a mixed life history population with a high reproductive effort (33.7%), strong seed bank, and high seedling establishment. However, a primarily perennial population with the lowest reproductive effort (0.5%) was identified at the warmest site, suggesting that conditions here could not support high sexual reproduction. Robustness of seed banks was strongly linked to reproductive shoot density, although the role of seed retention, germination and seedling survival require further investigation. Our study provides insights into one key aspect of seagrass resilience, and suggests that resilience assessments should include reproductive shoot density to inform their management and conservation.Cite this data: Vercaemer B. and Wong M. Reproductive ecology of Zostera marina L. (eelgrass) across varying environmental conditions. Published: May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/56cfea6f-aeca-47ed-94ab-c519d9e63c91

Effective conservation planning relies on understanding population connectivity which can be informed by genomic data. This is particularly important for sessile species like the horse mussel (Modiolus modiolus), a key habitat-forming species and conservation priority in Atlantic Canada), yet little genomic information is available to describe horse mussel connectivity patterns. We used more than 8000 restriction-site associated DNA sequencing-derived single nucleotide polymorphisms and a panel of 8 microsatellites to examine genomic connectivity among horse mussel populations in the Bay of Fundy, along the Scotian Shelf, and in the broader northwestern Atlantic extending to Newfoundland. Despite phenotypic differences between sampling locations, we found an overall lack of genetic diversity and population structure in horse mussels in the Northwest Atlantic Ocean. All sampled locations had low heterozygosity, very low FST, elevated inbreeding coefficients, and deviated from Hardy-Weinberg Equilibrium, highlighting generally low genetic diversity across all metrics. Principal components analysis, Admixture analysis, pairwise FST calculations, and analysis of outlier loci (potentially under selection) all showed no independent genomic clusters within the data, and an analysis of molecular variance showed that less than 1% of the variation within the SNP dataset was found between sampling locations. Our results suggest that connectivity is high among horse mussel populations in the Northwest Atlantic, and coupled with large effective population sizes, this has resulted in minimal genomic divergence across the region. These results can inform conservation design considerations in the Bay of Fundy and support further integration into the broader regional conservation network.Cite this data as: Van Wyngaarden, Mallory et al. (2024). Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus. Published: May 2025. Coastal Ecosystem Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth, NS.

Description:In the coming decades, warming and deoxygenation of marine waters are anticipated to result in shifts in the distribution and abundance of fishes, with consequences for the diversity and composition of fish communities. Here, we combine fisheries-independent trawl survey data spanning the west coast of the USA and Canada with high-resolution regional ocean models to make projections of how 34 groundfish species will be impacted by changes in temperature and oxygen in British Columbia (BC) and Washington. In this region, species that are projected to decrease in occurrence are roughly balanced by those that are projected to increase, resulting in considerable compositional turnover. Many, but not all, species are projected to shift to deeper depths as conditions warm, but low oxygen will limit how deep they can go. Thus, biodiversity will likely decrease in the shallowest waters (less than 100 m), where warming will be greatest, increase at mid-depths (100–600 m) as shallow species shift deeper, and decrease at depths where oxygen is limited (greater than 600 m). These results highlight the critical importance of accounting for the joint role of temperature, oxygen and depth when projecting the impacts of climate change on marine biodiversity.The rasters available in this dataset project the occurrence of each of the 34 groundfish species in a 3 km^2 grid cell for the historical baseline, as well as for two emissions scenarios, from each of the two regional ocean models (BCCM and NEP36). Each projection layer is provided as the mean projected occurrence as well as the lower and upper 95% confidence interval of projected occurrence.Methods:Estimated species response curves:We estimated how the observed distribution of groundfish species is determined by temperature, dissolved oxygen and seafloor depth using data from fisheries-independent scientific research trawls spanning the entire American and Canadian west coast. We included data from 4 surveys (NOAA West Coast, NOAA Alaska, NOAA Bering or DFO Pacific) from 2000 to 2019. For each species, we modelled occurrences in the coastwide trawl dataset using a generalized linear model (GLM) using the sdmTMB package in R v. 4.0.2. The predictors were temperature, log dissolved oxygen, log depth and survey. We included quadratic terms for temperature and log depth to allow species occurrences to peak at intermediate values. We fitted a breakpoint function for log dissolved oxygen to reflect the fact oxygen is a limiting factor. We assessed the forecasting accuracy of the SDM by comparing how well a model fitted to only data from 2000 to 2010 could forecast species’ occurrences in trawls within our focal region for the period of 2011–2019. We assessed all 77 groundfish species that were present in the overall trawl dataset, however the final analysis included only the 34 species for which the models had adequate forecasting ability.Projecting groundfish biodiversity changes:We based our groundfish biodiversity change projections on two regional models that downscale climate projections: the British Columbia Continental Margin model (BCCM) and the North-Eastern Pacific Canadian Ocean Ecosystem model (NEP36-CanOE). We used a historical baseline of 1986–2005 and future projected values for 2046–2065 based on RCP 4.5 and 8.5 emissions scenarios. Using the models that we validated in our forecasting accuracy assessment, we projected the occurrence of each species in each 3 km^2 grid cell for the historical baseline, as well as for two emissions scenarios, from each of the two regional ocean models.Uncertainties:Source survey data was collected by consistent methods with survey-grade GPS for all years included. Data quality is expected to be high. Modeled data are at 3 km resolution. Outputs are as accurate as source input models and are deemed to be of high quality and accurate based upon the precision of model inputs.Projecting biodiversity responses to climate change involves considerable uncertainty and our approach allows us to quantify some aspects of this. Of the uncertainty that we could quantify, roughly half was due to uncertainty in our SDMs and the remainder was due to regional ocean model uncertainty or scenario uncertainty. This amount of uncertainty in the SDMs is typical, stemming from the fact that contemporary species distributions are also influenced by other factors that we have not included in our model. In addition, although oxygen demand is understood to vary with temperature, limitations in the implementation of breakpoint models prevented us from estimating a temperature-dependent oxygen breakpoint. However, although somewhat unrealistic, this limitation is unlikely to have greatly increased the uncertainty in our SDMs because low oxygen concentrations occurred almost exclusively at depths where temperature variation and projected change was small.To reduce uncertainty due to year-to-year variation in climate, our model projections are based on 20-year climatologies with a future period that is far enough ahead to ensure that changes are unambiguously due to greenhouse gases. We have made projections based on two different emissions scenarios, and two different regional ocean models that are both downscaled from the same global model, the second generation Canadian Earth System Model (CanESM2), using different downscaling techniques. While the BCCM model was run inter-annually and then averaged to produce the climatologies, the NEP36 model used atmospheric climatologies with augmented winds to force the ocean model and produce representative climatologies. Comparing these regional projections provides an estimate of the uncertainty across different regional downscaling models and methods. We find that the projected impacts of climate change on the groundfish community are more sensitive to the differences in the regional ocean models than they are to the emissions scenarios used. However, these differences are in magnitude (changes tend to be larger based on NEP36 compared with the BCCM) rather than in direction, with both models resulting in similar overall patterns of biodiversity change and turnover for the groundfish community. Over the 60-year time period (1986–2005 versus 2046–2065) used in our study, our projections suggest that groundfish community changes are similar regardless of the scenario used.

In celebration of the tremendous diversity of tree species that tell the story of our culture and history, the NCC released in September 2020 a compilation of close to 170 remarkable trees across Canada’s Capital region entitled A Living Legacy: Remarkable Trees of Canada’s Capital. An interactive map and downloadable book are available for free on the NCC’s website and will allow the public to discover distinctive features of these trees, revealing a story of the beauty of our natural heritage through the rich diversity of species thriving within Canada’s Capital. This compilation features trees according to their commonalities, which can include their physical relationship with the land, the fact that they were a source of food for Indigenous peoples, or for their contribution to the forest industry.https://ncc-ccn.gc.ca/remarkable-treeshttps://ncc-ccn.maps.arcgis.com/apps/MapJournal/index.html?appid=a9ba98fb7e8b4c2ba9be337235b95291

The RVI/CVI database is derived from the CanEcumene 3.0 GDB (Eddy, et. al. 2023) using a selection of socio-economic variables identified in Eddy and Dort (2011) that aim to capture the overall state of socio-economic conditions of communities as ‘human habitats’. This dataset was developed primarily for application in mapping socio-economic conditions of communities and regions for environmental and natural resource management, climate change adaptation, Impact Assessments (IAs) and Regional Assessments (RAs), and Cumulative Effects Assessment (CEA).The RVI/CVI is comprised of five sub-indicators: 1) population change, 2) age structure, 3) education levels, 4) employment levels, and 5) real estate values. Index values are based on percentile ranks of each sub-indicator, and averaged for each community, and for three ranked groups: 1) all of Canada, 2) by province, and 3) by population size. The data covers the Census periods of 2001, 2006, 2011 (NHS), 2016, and 2021.The index is mapped in two ways: 1) as ‘points’ for individual communities (CVI), and 2) as ‘rasters’ for spatial interpolation of point data (RVI). These formats provide an alternative spatial framework to conventional StatsCan CSD framework. (For more information on this approach see Eddy, et. al. 2020).============================================================================================Eddy, B.G., Muggridge, M., LeBlanc, R., Osmond, J., Kean, C., and Boyd, E. 2023. The CanEcumene 3.0 GIS Database. Federal Geospatial Platform (FGP), Natural Resources Canada. https://gcgeo.gc.ca/viz/index-en.html?keys=draft-3f599fcb-8d77-4dbb-8b1e-d3f27f932a4bEddy B.G., Muggridge M, LeBlanc R, Osmond J, Kean C, Boyd E. 2020. An Ecological Approach for Mapping Socio-Economic Data in Support of Ecosystems Analysis: Examples in Mapping Canada’s Forest Ecumene. One Ecosystem 5: e55881. https://doi.org/10.3897/oneeco.5.e55881Eddy, B.G.; Dort, A. 2011. Integrating Socio-Economic Data for Integrated Land Management (ILM): Examples from the Humber River Basin, western Newfoundland. Geomatica, Vol. 65, No. 3, p. 283-291. doi:10.5623/cig2011-044.