Marine protected areas (MPAs) are one among a number of spatial management tools, and are defined as areas that are established for the long-term, and managed through legal or other effective means, to achieve the long-term conservation of nature with associated ecosystem services and cultural values.Currently, Fisheries and Oceans Canada has a number of MPAs designated under the Oceans Act and Areas of Interest for new MPAs at various stages of progress towards designation. These areas are ecologically significant, with species and/or features that require special management consideration.  An Oceans Act MPA can be established for any of the six conservation purposes outlined in the Act:• The conservation and protection of commercial and non-commercial fishery resources, including marine mammals, and their habitats;  • The conservation and protection of endangered or threatened marine species, and their habitats;  • The conservation and protection of unique habitats;  • The conservation and protection of marine areas of high biodiversity or biological productivity; • The conservation and protection of any other marine resource or habitat as is necessary to fulfill the mandate of the Minister; and• The conservation and protection of marine areas for the purposes of maintaining ecological integrity

Appropriately responding to a marine pollution event, especially hydrocarbon spills, often requires detailed knowledge of local habitat and environmental features. Access to high resolution habitat profiles can support effective spill response plans, informing discussions on protection priorities or expediated remediation. However, marine habitat composition data for a given area is often lacking due to the high cost and effort of conducting such surveys across the vast shorelines of Canada. The purpose of this study was to develop methodologies for conducting rapid and affordable habitat compositions in the marine environment via drone aerial photography; an emerging technology for conducting high resolution surveys. We used the Musquash Marine Protected Area (MPA; Musquash, NB, Canada) as a model system as it contains a diverse range of habitat types, is a region of conservation concern in Atlantic Canada, and is in close proximity to oil and gas handling facilities and vessel traffic. The MPA consists of a tidal river that outflows into the Bay of Fundy. Using Geographic Information System (GIS) software, we subdivided the MPA into several transects (N =61) that were used to generate flight plans for a Remotely Piloted Aircraft System (RPAS; DJI Mavic 3 Enterprise, DJI ). The RPAS was flown (6 m s-1) at an altitude of 100m (Above ground level) taking images with side (70%) and front (80%) overlap. Resulting images were then compiled as an orthomosaic map using Pix4Dmatic software. These data will be used to inform marine spill response planning in the region, to support marine planning and conservation, and Marine Protected Area (MPA) monitoring efforts as well as develop further methodological approaches for conducting RPAS-based habitat surveys in other coastal systems within Atlantic Canada. Cite this data as: Lawrence MJ, Coates PJ, Matheson K, Hamer A. Characterisation of intertidal habitat types in the Musquash Marine Protected Area using aerial drone photography. Published November 2025. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B.

Fisheries and Oceans Canada (DFO) selected the Manicouagan Peninsula area as a site of interest for the possible establishment of a Marine Protected Area (MPA) in 1998. With this in mind, DFO conducted surveys to assess benthic biodiversity between 2006 and 2008. During the various campaigns, more than a hundred stations were sampled using various tools to target epibenthic and endobenthic species. Various tools were used during the three years of sampling, including an SM (Smith-McIntyre) grab with an area of 0.1 m² and a height of 20 cm, an IKU-type grab with a surface area of 1.5 m² and a height of 50 cm, and a hydraulic dredge measuring 1.36 m wide and 0.66 m high with a net mesh size of 2.3 cm. As the dredge clogged fairly quickly, small organisms were collected in abundance. In 2006 and 2007, a camera mounted on a sled pulled by a boat along transects of varying lengths depending on the sampling campaign collected images (3,008 x 2,000 pixels) every 10 seconds, representing a seabed area of 40 x 40 cm.The data are presented in Darwin Core format in the file “donnees_manicouagan_data” The available data include taxonomic identifications of samples (individuals collected or identified in images) as well as metadata related to stations, including sampling date, depth, and geographic coordinates. Please note that the depths are for informational purposes only, since the bathymetry is very steep in this region.Further details on sampling can be found in the following report: Provencher, L et Nozères, C. 2011. Protocole de suivi des communautés benthiques de la zone de protection marine Manicouagan. Secr. can. de consult. sci. du MPO. Doc. de rech. 2011/051. iv +25 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/344357.pdf

Marine Protected Areas require comprehensive monitoring to ensure objectives are achieved; however, monitoring natural ecosystems at scale is challenged by the biodiversity it aims to measure. Environmental DNA (eDNA) metabarcoding holds promise to address this monitoring challenge. We conducted paired sampling at 54 sites for fish and invertebrate assemblages in the Northwest Atlantic using groundfish trawls and eDNA metabarcoding of benthic seawater using four genetic markers (12S rRNA, 16S rRNA, 18S rRNA, and CO1). Compared to trawling, eDNA detected similar patterns of species turnover, larger estimates of gamma diversity, and smaller estimates of alpha diversity. A total of 63.6% (42/66) of fish species captured by trawling were detected by eDNA, along with an additional 26 species. Of the 24 missed detections by eDNA, 12 were inevitable as they lacked reference sequences. Excluding taxa assigned to higher than species level and those without a species name, 23.6% (17/72) of invertebrate species captured by trawling were detected by CO1, which detected an additional 98 species. We demonstrate that eDNA is capable of detecting patterns of community assemblage and species turnover in an offshore environment, emphasizing its strong potential for a non-invasive, comprehensive, and scalable tool for biodiversity monitoring supporting marine conservation programmes.Cite this data as: Jeffery, N., Rubidge, E., Abbott, C., Westfall, K., Stanley, R. (2024): Data of: eDNA metabarcoding enriches traditional trawl survey data for monitoring biodiversity in the marine environment.Published: August 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/43a91ba7-8025-4330-88db-db14022d729d

Identification of a potential spawning site for lumpfish during an ichtyofauna inventory conducted in the eelgrass in Sept-Îles bay by Calderón (1996).Purpose:The 1996 document by par Isabel Calderón has been achieved by the "Corporation de protection de l'environnement de Sept-Îles" with the support of Department of Fisheries and Oceans (DFO) as part of the "Biodiversity" program, St. Lawrence Vision 2000 (Canada).Source:Calderón, I. 1996. Caractérisation des habitats du poisson de la baie de Sept-Îles - Phase II. Corporation de protection de l'environnement de Sept-Îles. 37 pages.

Funded under DFO's Marine Conservation Targets Program in partnership with the Huntsman Marine Science Centre (HMSC), this diver-based imagery and sample collection benthic survey documents the occurrence of sponges at 42 dive sites in the Eastern Shore Islands (ESI) Area of Interest (AOI, ~2089 km2) off the Atlantic coast of Nova Scotia, Canada from dive surveys conducted in summer 2021 and 2022. Water quality, species occurrences and counts, habitat, slope, and substrate characteristics were catalogued through diver log sheets, camera imagery, specimen vouchers, and high-resolution bathymetric data. A total of 54 dives to depths from 11 to 33 m (below sea level), collecting up to 147 still images, one-hour of video, and 17 specimen samples per site, resulted in 220 observations for 27 different sponge taxa. This included three new records for Canada (Hymedesmia stellifera, Plocamionida arndti, Hymedesmia jecusculum) and a range extension for a species new to science (Crellomima mehqisinpekonuta) which was recently described from the Bay of Fundy. There were also four species which may seem to be new to science (Halichondria sp., Hymedesmia sp., Protosuberires sp., and Sphaerotylus sp.). Sponges were found to occupy a diversity of micro-habitats, often several different ones in proximity. A total of eight distinct habitat classes were defined, based on varying abundances and diversity of sponges and associated benthic species. These are likely widely distributed among the many complex submerged seabed features within this AOI. Collected specimens were preserved and are stored at the Atlantic Reference Centre (ARC) in St. Andrew's, New Brunswick.Cite this data as: Goodwin, C., Cooper, J.A., Lawton, P., Teed, L.L. 2025. Sponge occurrence and associated species and habitat descriptions derived from the 2021 and 2022 SCUBA diving surveys in the Eastern Shore Islands Area of Interest, Nova Scotia. Version 1.4. Fisheries and Oceans Canada. Occurrence dataset. https://ipt.iobis.org/obiscanada/resource?r=eastern_shore_islands_sponge_survey_2021_2022&v=1.4

The layer presents the information on the distribution of eelgrass (Zostera marina) beds in James Bay, Chaleur Bay, Estuary and Gulf of St. Lawrence according to a literature review of documents produced between 1987 and 2009. Additional InformationEelgrass's inventory was produced according to a literature review of the following documents:Calderón, I. 1996. Caractérisation de la végétation et de la faune ichtyenne de la baie de Sept-Îles. Document réalisé par la Corporation de protection de l'environnement de Sept-Îles pour Pêches et Océans Canada. 26p. + 5 annexes.Comité côtier Les Escoumins à la Rivière Betsiamites. 2004. Inventaire de localisation des bancs de zostère marine dans la zone côtière Les Escoumins à la rivière Betsiamites. 9 p.Comité ZIP Côte-Nord du Golfe. 2001. Inventaire du potentiel côtier et marin de la Basse-Côte-Nord. Version préliminaire de rapport sous forme de CD-ROM, Sept-Îles, mars 2001.Comité ZIP de la rive nord de l’estuaire. 2008. Guide d’intervention en matière de protection et de mise en valeur des habitats littoraux d’intérêt de la rive nord de l’estuaire maritime (fiches 14 à 20). 8 p. + 7 fiches + annexe.Conseil Régional de l’Environnement Gaspésie et des Îles-de-la-Madeleine (2004). Inventaire et étude des bancs de zostère marine sur le territoire couvert par les comités de gestion intégrée de la zone côtière de l’Est du Québec. CONSORTIUM GAUTHIER & GUILLEMETTE - G.R.E.B.E. 1992. Description et cartographie des habitats côtiers de la Baie de Hannah jusqu'à la rivière au Castor. Rapport présenté à Hydro-Québec, Complexe Nottaway-Broadback-Rupert (NBR), Vol. 2, Annexe cartographique.Giguère, M., C. Duluc, S. Brulotte, F. Hazel, S. Pereira et M. Gaudet. 2006. Inventaire d’une population d'huître américaine (Crassostrea virginica) dans le Bassin aux Huîtres aux Îles-de-la-Madeleine en 2005. Rapport manuscrit. vi + 21 p.Grant, C. et L. Provencher, 2007. Caractérisation de l’habitat et de la faune des herbiers de Zostera marina (L.) de la péninsule de Manicouagan (Québec). Rapp. tech. can. sci. halieut. aquat. 2772 : viii + 65 p. Groupe Environnement Littoral. 1992. Complexe NBR. La zostère marine. Rapport présenté à la vice-présidence Environnement d'Hydro-Québec. 9 p. + 2 cartes.Harvey, C. et D. Brouard. 1992. Étude exploratoire du barachois de Chandler: aspects biophysiques et contamination. Rapport présenté à Environnement Canada, Direction de la protection de l'environnement région du Québec. 39 p. et annexes.Hazel, François, 2002. Données de terrain prises par F. Hazel, Septembre 2002.Ellefsen, H.-F. 2009. Communication personnelle de Hans-Frédéric Ellefsen (MPO).Jacquaz et coll. 1990. Étude biophysique de l'habitat du poisson de quatre barachois de la baie des Chaleurs.Kedney, G. et P. Kaltenback. 1996. Acquisition de connaissances et mise en valeur des habitats du banc de Portneuf. Document réalisé par la firme Pro Faune pour le Comité touristique de Rivière-Portneuf. 50 pages et 5 annexes.Lalumière, R. 1987. Répartition de la zostère marine (Zostera marina) sur la côte est de la baie James; été 1987. Rapport produit par Gilles Shooner et Associés inc. pour la Société d’énergie de la Baie James. 30 p. et annexes.Lalumière, R., L. Belzile et C. Lemieux. 1992. Étude de la zostère marine le long de la côte nord-est de la baie James (été 1991). Rapport présenté au Service écologie de la SEBJ. 31 p. + carte.Leblanc, J. 2002. Communication personnelle de Judith Leblanc (MPO).Lemieux, C. 1995. Acquisition de connaissances des habitats côtiers dans la région de Rimouski (1995). Rapport du Groupe-Conseil GENIVAR présenté au Ministère des Pêches et des Océans du Canada, Division de la Gestion de l’Habitat du Poisson, 52 pages + 2 annexes.Lemieux, C. et R. Lalumière. 1995. Acquisition de connaissances des habitats côtiers du barachois de Saint-Omer. Rap. du Groupe conseil Genivar inc. pour la DGHP, MPO, 44 pages + 3 ann.Martel, Marie-Claude, Lizon Provencher, Cindy Grant, Hans-Frédéric Ellefsen et Selma Pereira, 2009. Distribution and description of eelgrassbeds in Québec. Fisheries and Oceans Canada, Canadian Science Advisory Secretariat, Research Document 2009/050. 45p. Morin, D. 2009. Communication personnelle de Danièle Morin (MRNF).Naturam Environnement. 1999. Caractérisation biophysique, socio-économique et détermination des enjeux dans un secteur potentiel pour l’identification d’une zone de protection marine pilote: portion ouest de la MRC Manicouagan. Baie-Comeau. 311 p. Pelletier, Claudel. 2003. Communication personnelle de Claudel Pelletier, FAPAQ, lettre en date du 24 février 2003.Pereira, S. 2009. Communication personnelle de Selma Pereira (MPO).Vaillancourt, M.-A. et C. Lafontaine. 1999. Caractérisation de la Baie Mitis. Jardins de Métis et Pêches et Océans Canada. Grand-Métis. 185 p.

Monitoring programs are an important component of Marine Protected Area (MPA) management, providing requisite information on the state of, and changes in, protected ecosystems. Monitoring is required to gauge the efficacy of MPAs towards their conservation objectives and provides information needed to evaluate the benefits provided to biodiversity from restricted access. However, in Nova Scotia’s coastal zone, there is a lack of baseline data, including fish diversity and community structure in macrophyte beds, which makes monitoring intractable. In 2017, the Eastern Shore Islands was identified as a coastal Area of Interest (AOI) for the potential establishment of an MPA. In 2018 an overview was conducted, detailing the spatial and temporal ecological attributes of the AOI. This information revealed a unique coastal ecosystem associated with a dense archipelago and relatively natural seascape. The abundance of plant and algal biogenic habitats within the area was assumed to host a diversity of juvenile fish species. The primary objective of this project is to begin development of a long-term biodiversity monitoring program in the Eastern Shore Islands and other coastal Areas of Interest for conservation planning. We propose implementing this program with the use of direct (beach seines, scuba diving, and stable isotope sampling) and indirect (environmental DNA - eDNA) sampling. Environmental DNA (eDNA) is a useful tool to examine marine biodiversity in a non-invasive way, on a small spatial scale. eDNA can be easily collected and filtered and is becoming increasingly cost efficient to sequence and may be a useful marine protected area monitoring tool. While eDNA generally yields comparable results to traditional sampling techniques in terms of biodiversity captured, little is known on how eDNA signals fluctuate across years (or even days to weeks). We will compare species detections using eDNA metabarcoding to visual surveys (scuba and seine nets) to census eelgrass beds across the coastal zone, providing a baseline and time series of species diversity on which to base long-term monitoring. This project will generate inventories of eelgrass bed locations, and fish and invertebrate diversity within eelgrass beds. We additionally collect fish length distribution data to examine seasonal and inter-annual trends in size structure over time. The data generated from direct and indirect sampling will provide a comprehensive and ongoing catalog of species diversity and community structure in coastal eelgrass beds, as well as best-practices for sampling eDNA in the coastal environment.Cite this data as: Jeffery, N.W., Pettitt-Wade, H., Van Wyngaarden, M., and Stanley, R.R.E. Maritimes Coastal Biodiversity Monitoring Program – Beach Seining.Published: December 2023. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS. https://open.canada.ca/data/en/dataset/dbbcb23a-d018-4b70-b8ec-89997aded770

Marsh inventory in the Chaleur Bay, the Estuary and the Gulf of St. Lawrence according to a literature review of documents produced between 1985 and 2002.Additional InformationThe marsh inventory was produced according to a literature review of the following documents:Bolduc, F. et P. Kaltenback. 1995. Caractérisation de l'habitat du poisson du banc de Portneuf et avenues de mise en valeur. Rapport présenté par Pro Faune à la Corporation de développement touristique de Rivière-Portneuf. 13 pages et annexes.Comité ZIP Baie des Chaleurs, 2002. Données numériques acquises suite à la cartographie de milieux humides Baie des Chaleurs pour le comité ZIP (printemps 2002).Comité ZIP Côte-Nord du Golfe. 2001. Inventaire du potentiel côtier et marin de la Basse-Côte-Nord. Version préliminaire de rapport sous forme de CD-ROM, Sept-Îles, mars 2001.Kedney, G. et P. Kaltenback. 1996. Acquisition de connaissances et mise en valeur des habitats du banc de Portneuf. Document réalisé par la firme Pro Faune pour le Comité touristique de Rivière-Portneuf. 50 pages et 5 annexes.Labrecque, J., G. Lavoie et F. Boudreau. 1995. Les plantes susceptibles d'être désignées menacées ou vulnérables du barachois de la rivière Malbaie, Barachois-Ouest, Gaspésie. Gouvernement du Québec, ministère de l'Environnement et de la Faune, Direction de la conservation et du patrimoine écologique, Québec. 20 p.Lemieux, C. 1995. Acquisition de connaissances des habitats côtiers dans la région de Rimouski (1995). Rapport du Groupe-Conseil GENIVAR présenté au Ministère des Pêches et des Océans du Canada, Division de la Gestion de l’Habitat du Poisson, 52 pages + 2 annexes.Lemieux, C. 2001. Projet de projection et de mise en valeur de la baie au Chêne et d'habitats côtiers de la région de Pointe-à-la-Croix (Gaspésie). Rapport du Groupe conseil Génivar inc. Présenté au Comité ZIP Baie des Chaleurs et au ministère de l'Environnement du Québec, direction du patrimoine écologique et du développement durable. 76 p. + 8 annexes.Lemieux, C. et R. Lalumière. 1995. Acquisition de connaissances des habitats côtiers du barachois de Saint-Omer. Rap. du Groupe conseil Genivar inc. pour la DGHP, MPO, 44 pages + 3 ann.Les consultants en environnement Argus inc. 1995a. Caractérisation physico-chimique et biologique de l'habitat du poisson du barachois de Malbaie: automne 1994. Rapport présenté au Club des ornithologues de la Gaspésie dans le cadre du programme Saint-Laurent Vision 2000. 62 p. + ann.Les consultants en environnement Argus inc. 1995b. Barachois de Malbaie: étude d'avant-projet de conservation et de mise en valeur. Rapport présenté au Club des ornithologues de la Gaspésie dans le cadre du programme Saint-Laurent Vision 2000. 71 p. + ann.Les consultants en environnement Argus inc. 1995c. Étude biophysique complémentaire de conservation et mise en valeur de la baie des Capucins. Rapport présenté à la corporation de développement de Les Capucins. 48 p. + ann.Les consultants en environnement Argus inc. 1998. Perspectives d'aménagement et de restauration des marais à spartine du Québec. Rapport final. En collaboration avec le Service canadien de la Faune (Environnement Canada), Pêches et Océans Canada, le Ministère des Transports du Québec et Canards Illimités inc. 123 pages + annexes et index cartographique.Létourneau, G. et M. Jean. 1996. Cartographie des marais, marécages et herbiers aquatiques le long du Saint-Laurent par télédétection aéroportée. Environnement Canada – Région du Québec, Conservation de l’environnement, Centre Saint-Laurent, Montréal. 101 pagesLétourneau, Guy. 1991. Milieux humides, Base de données Létourneau 1991 (de Cornwall à Trois-Pistoles et les Îles-de-la-Madeleine.Logimer. 1985. Développement d'un programme de conservation et de reconstitution des habitats lagunaires gaspésiens. Rapport présenté à Pêches et Océans Canada, section Habitat du poisson. 306 p. et annexes.Procéan inc. 1996. Caractérisation du milieu physique et inventaire biologique du barachois de New Richmond : rapport final. Présenté à la Division de la gestion de l'habitat du poisson, Pêches et Océans Canada par Procéan inc.Vaillancourt, M.-A. et C. Lafontaine. 1999. Caractérisation de la Baie Mitis. Jardins de Métis et Pêches et Océans Canada. Grand-Métis. 185 p.

Marine classification schemes based on abiotic surrogates often inform regional marine conservation planning in lieu of detailed biological data. However, theses chemes may poorly represent ecologically relevant biological patterns required for effective design and management strategies. We used a community-level modeling approach to characterize and delineate representative mesoscale (tens to thousands of kilometers) assemblages of demersal fish and benthic invertebrates in the North-west Atlantic. Hierarchical clustering of species occurrence data from four regional annual multispecies trawl surveys revealed three to six groupings (predominant assemblage types) in each survey region, broadly associated with geomorphic and oceanographic features. Indicator analyses identified 3–34 emblematic taxa of each assemblage type. Random forest classifications accurately predicted assemblage dis-tributions from environmental covariates (AUC > 0.95) and identified thermal limits (annual minimum and maximum bottom temperatures) as important pre-dictors of distribution in each region. Using forecasted oceanographic conditions for the year 2075 and a regional classification model, we projected assemblage dis-tributions in the southernmost bioregion (Scotian Shelf-Bay of Fundy) under ahigh emissions climate scenario (RCP 8.5). Range expansions to the north eastare projected for assemblages associated with warmer and shallower waters of the Western Scotian Shelf over the 21st century as thermal habitat on the rela-tively cooler Eastern Scotian Shelf becomes more favorable. Community-level modeling provides a biotic-informed approach for identifying broadscale ecolog-ical structure required for the design and management of ecologically coherent, representative, well-connected networks of Marine Protected Areas. When com-bined with oceanographic forecasts, this modeling approach provides a spatial tool for assessing sensitivity and resilience to climate change, which can improve conservation planning, monitoring, and adaptive management.Cite this data as: O'Brien, J.M., Stanley, R.R.E., Jeffery, N.W., Heaslip, S.W., DiBacco, C., and Wang, Z. Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic.Published: December 2024. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS.https://open.canada.ca/data/en/dataset/14d55ea5-b17d-478c-b9ee-6a7c04439d2b