The Beaufort Regional Environmental Assessment-Marine Fishes Project (2012-2014) and Canadian Beaufort Sea-Marine Ecosystem Assessment (CBS-MEA, 2017-present) conducted by Fisheries and Oceans Canada provide offshore surveys of marine fishes and ecosystems on the Canadian Beaufort Shelf and slope in August and early September. The projects focus on integrating oceanography, food web linkages, physical-biological couplings and spatial and inter-annual variability, within the context of ongoing climate-driven change including enhanced Ocean Acidification. Sampling was conducted from the F/V Frosti at stations along transects spanning 20-1000 m. Zooplankton was collected using a bongo or multi-net system in conjunction with oceanographic and biogeochemical sampling.

Since 1985, research surveys targeting scallops—primarily the sea scallop (Placopecten magellanicus) and, to a lesser extent, the Icelandic scallop (Chlamys islandica)—have been conducted by Fisheries and Oceans Canada (DFO) at one- or two-year intervals around the Magdalen Islands (fishing area 20A). The main objective of this survey is to assess the status of sea scallop stocks. The study area is situated south of the Magdalen Islands, where scallop beds are typically sampled at depths ranging from approximately 25 to 35 m. Sampling stations are randomly selected from a predetermined fixed grid, with sampling conducted along transects at these randomly assigned locations within the study area. Each station is sampled using a lined Digby scallop dredge (20 mm mesh size), towed for roughly 500 m across the seabed.This publication includes three files: the file biometriePetoncle_20, which contains detailed biometric data (species, size, weights and sex) from 1998 to 2024; the file taillePetoncle_20, which provides the size of the individuals sampled from 2009 to 2024; and the file traitPetoncle_20 which contains the abundances and densities per tow from 2009 to 2024. Data on abundances and densities per tow from 1998-2008 is available upon request.This dataset is updated every one to two years as data becomes available. A cleaning of aberrant data has been carried out. However, there is missing data in various columns of the dataset – use the data with caution. If you have any questions please contact DFO.DataManagementSAISB-GestionDonneesDAISS.MPO@dfo-mpo.gc.ca or the author. For certain time periods, associated species are identified and semi-quantitatively counted directly on the sorting table, and the results are presented in the following publications: - https://open.canada.ca/data/en/dataset/6529a4b0-f863-4568-ac71-1fa26cf68679- https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53b 

Acoustic telemetry allows detailed observations of the movement behaviour of many species and as tags get smaller, smaller organisms may be tagged. The number of studies using acoustic telemetry to evaluate marine invertebrate movement is growing, but novel attachment methods include unknowns about the effects of tagging procedures on individual survival and behaviour. This study compared methods of tag attachment on green sea urchins (Strongylocentrotus droebachiensis) to determine the feasibility of using acoustic transmitters to track echinoid movement. Four tagging methods were compared in the lab and tag retention, urchin condition, and survival analysed. Two tagging methods (Dyneema® fishing line and T-bar tags) were evaluated in the field using an existing acoustic telemetry array. Urchins were tagged and the study area revisited one week and 2 months post-release by scuba divers to estimate movement and tag retention. The best methods in the lab, with high tag retention, survival, and minimal effects on urchin condition, were fishing line methods. T-bar tags, although showing high tag retention, caused significant mortality and had deleterious long-term effects on urchin condition and behaviour. After 2 months in the field, as in the lab, fishing line was a more effective tagging method. Urchins tagged with fishing line showed increased estimates of space occupancy compared to T-bar-tagged urchins and a single fishing-line tagged individual was found by divers in good health after 80 days. Combined, these laboratory and field results demonstrate the feasibility of using acoustic telemetry to observe urchin movement. Results strongly suggest that surgical attachment methods that minimize injuries at the attachment site should be prioritized for echinoid tagging studies. Together, lab and field tests indicate that acoustic telemetry is a promising method to examine marine echinoid movement over ecologically relevant spatial and temporal scales.The data available includes the laboratory data (tag retention, survival, diameter, wet weight, gonad weight and condition/righting time) and the field data (metadata and acoustic telemetry detections for tagged individuals, results of diver searches and 2-day estimates of movement measured in the field). Data from the laboratory experiment and diver observations in the field have been verified and undergone a control for quality. Acoustic telemetry detections are raw detection files (unfiltered); see the published article for a description of how the data were treated for analyses (https://doi.org/10.1186/s40317-022-00309-8).

A research survey on American lobster (Homarus americanus) and rock crab (Cancer irroratus) has been carried out annually on the Magdalen Islands since 1995 to assess the abundance and structure of populations in this area. The survey is carried out during the first two weeks of September and covers the southern part of the Magdalen Islands, from "Baie de Plaisance" to "Grande-Entrée", extending slightly eastwards between "Havre-aux-Maisons" and "Grande-Entrée". The survey lasts 8 to 15 days, depending of the weather conditions, and covers a maximum of 48 stations. Approximately half of the stations are surveyed in duplicate (two tows per station). The tows always cover 500 meters, with a slightly variable trawl opening (as explained above), averaging around 10 meters.The gear used is a Nephrops trawl, a benthic trawl originally developed for langoustine fishing in Brittany, but slightly modified to target lobster. The trawl is deployed from the CCGS Leim and the harvested organisms are hauled aboard and sorted. Cephalothorax length, sex and shell stage are recorded for all lobsters. This is supplemented by information on reproductive conditions for certain size classes, and dissections of 25 males and 25 females per mission. Rock crabs are also included in the survey and are counted with additional measurements of shell width, sex and shell condition that are recorded on predetermined stations. For other stations individuals data are collected depending on the time available between trawl hauls.The publication contains 4 files; the "Information_stations" file which contains the data of the stations, the "Data_homard_lobster_survey" file which contains the measurements of each lobster, the "Nombre_crabe_crab_number" file which contains the count of rock crabs, the "Mesure_crabe_crab_measurement" file contains the characteristics measured for each crab. Each of the files can be linked by the "date", "st", "tr" columns. The “bat” column notes the boat code, because the gear is not deployed in the same way on each boat.*This record consist of raw data and quality has not been verifiedAssociated species are identified and semi-quantitatively counted directly on the sorting table, and the results are presented in the following publication: https://open.canada.ca/data/en/dataset/99cb7034-f3d5-4da4-a5bc-e81315cfb8eb

Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.These polygons identify sea pen fields from the broader distribution of seapens in the region as sampled by Alfredo trawl gear in the Eastern Arctic biogeographic zone. A 0.25 kg minimum threshold for the sea pen catch was identified as the weight that separated the sea pen field habitat from the broader distribution of sea pens with these research vessel tow data and gear type.

Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.These polygons identify sponge grounds from the broader distribution of sponges in the region as sampled by Alfredo gear in the Eastern Arctic biogeographic zone. A 70 kg minimum threshold for the sponge catch was identified as the weight that separated the sponge ground habitat from the broader distribution of sponges with these research vessel tow data and gear type.

Fisheries and Oceans Canada (DFO) has been conducting surface water trawl surveys since 1992 in the coastal waters of British Columbia, Washington, Oregon and Alaska and in the high seas of the Gulf of Alaska. These surveys initially focused on determining the migratory patterns (1992-2002) and on the growth and physiology (2003-2016) of juvenile Pacific Salmon. Since 2016, these surveys have been broadened to monitor the whole pelagic ecosystem, retaining a focus on juvenile Pacific Salmon. In this record, surveys were conducted in continental slope waters at depths greater than 400 m out to the Gulf of Alaska, between 1995 and 2011. Periodically, there are tows from surveys conducted in other regions that occurred on the continental slope and they are included here. This set of data also includes data collected during the International Year of Salmon survey in 2022.

Spiny dogfish (Squlaus acanthias), is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

PURPOSE:In this study, we examined the structure and function of the Southampton Island marine food web across 149 species of benthic and pelagic invertebrates, fishes, marine mammals and seabirds collected from 2016 to 2019, to provide a baseline for future studies that aim to quantify temporal changes in food web structuring. More specifically,we used a multi-biomarker approach combining stable isotopes and HBIs to: (i) determine the vertical trophic structure of the marine food web, (ii) investigate the contribution of benthic and pelagic-derived prey to the higher trophic level species of the Arctic food web, and (iii) determine the role of ice algae and phytoplankton carbon source use across different trophic levels and compartments (pelagic and benthic). By shedding new light on the functioning of the Southampton Island food web and specifically how the contribution of ice algae and benthic habitat shapes its structure, these results will be relevant to adaptive management and conservation initiatives implemented in response to anthropogenic stressors and climate change. DESCRIPTION:Climate-driven alterations of the marine environment are most rapid in Arctic and subarctic regions, including Hudson Bay in northern Canada, where declining sea ice, warming surface waters and ocean acidification are occurring at alarming rates. These changes are altering primary production patterns that will ultimately cascade up through the food web. Here, we investigated (i) the vertical trophic structure of the Southampton Island marine ecosystem in northern Hudson Bay, (ii) the contribution of benthic and pelagic-derived prey to the higher trophic level species, and (iii) the relative contribution of ice algae and phytoplankton derived carbon in sustaining this ecosystem. For this purpose, we measured bulk stable carbon, nitrogen and sulfur isotope ratios as well as highly branched isoprenoids in samples belonging to 149 taxa, including invertebrates, fishes, seabirds and marine mammals. We found that the benthic invertebrates occupied 4 trophic levels and that the overall trophic system went up to an average trophic position of 4.8. The average δ34S signature of pelagic organisms indicated that they exploit both benthic and pelagic food sources, suggesting there are many interconnections between these compartments in this coastal area. The relatively high sympagic carbon dependence of Arctic marine mammals (53.3 ± 22.2 %) through their consumption of benthic invertebrate prey, confirms the important role of the benthic subweb for sustaining higher trophic level consumers in the coastal pelagic environment. Therefore, a potential decrease in the productivity of ice algae could lead to a profound alteration of the benthic food web and a cascading effect on this Arctic ecosystem.Collaborators:Centre for Earth Observation Science, University of Manitoba, Winnipeg, Manitoba, Canada - R´emi Amiraux, C.J. Mundy, Jens K. Ehn, Z.A. Kuzyk.Quebec-Ocean, Sentinel North and Takuvik, Biology Department, Laval University, Quebec, Quebec, Canada - Marie Pierrejean.Scottish Association for Marine Science, Oban, UK - Thomas A. Brown.Department of Natural Resource Sciences, McGill University, Ste. Anne de Bellevue, Quebec, Canada - Kyle H. Elliott.Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, Canada - Steven H. Ferguson, Cory J.D. Matthews, Cortney A. Watt, David J. Yurkowski.School of the Environment, University of Windsor, Windsor, Ontario, Canada - Aaron T. Fisk.Science and Technology Branch, Environment and Climate Change Canada, Ottawa, Ontario, Canada - Grant Gilchrist.College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Fairbanks, AK, USA - Katrin Iken.Department of Earth Sciences, University of New Brunswick, Fredericton, NB, Canada - Audrey Limoges.Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada - Oliver P. Love, Wesley R. Ogloff.Department of Arctic Biology, The University Centre in Svalbard, Longyearbyen, Norway - Janne E. Søreide.

Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses wereperformed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.These polygons identify small gorgonian coral fields from the broader distribution of small gorgonian corals in the region as sampled by Campelen trawl gear in the Eastern Arctic biogeographic zone. A 0.05 kg minimum threshold for the small gorgonian coral catch was identified as the weight that separated the small gorgonian field habitat from the broader distribution of small gorgoninan corals with these research vessel tow data and gear type.