Fishing event data (e.g. year, date, time, location, catch and effort) and associated biological data from the Offshore Stratified Random Survey component of the annual Sablefish Research and Assessment Survey on the British Columbia coast.IntroductionDFO and the Canadian Sablefish Association (CSA) collaborate to undertake an annual fishery-independent research survey under a joint agreement. The survey employs longline trap gear to obtain catch rate data, gather biological samples, capture oceanographic measurements, and collect tag release and recapture data.Data summaries provided here are for the offshore stratified random sampling design (StRS) component of the survey, which has been conducted annually since 2003. The design of the sablefish survey has developed over time by incorporating and discontinuing components, including individual experimental studies (not available on OpenData). This StRS Survey component differs in methodology from the other two survey components: (1) Standardized trap survey – mainland inlets (1994-present; available on OpenData using link below), and (2) Standardized trap survey – offshore indexing and offshore tagging (1990 – 2010; not yet available on OpenData). The Sablefish offshore stratified random trap survey (StRS) follows a depth and area stratified random sampling design. The survey area is partitioned into five spatial strata (S1 to S5) and three depth strata (RD1 to RD3) for a total of 15 strata. The five spatial strata are S1 (South West Coast Vancouver Island or SWCVI), S2 (North West Coast Vancouver Island or NWCVI), S3 (Queen Charlotte Sound or QCS), S4 (South West Coast of Haida Gwaii or SWCHG), and S5 (North West Coast of Haida Gwaii or NWCHG). The three depth strata are 100-250 fathoms (RD1), 250-450 fathoms (RD2), and 450-750 fathoms (RD3). The area within each of the 15 strata are sectioned into 2 km x 2 km grid cells or ‘fishing blocks’ from which set locations are randomly chosen each year. Survey procedures are standardized and documented in Canadian Technical Reports of Fisheries and Aquatic sciences.Data tables provided for the offshore stratified random survey include (i) effort, (ii) catch, (iii) biological information, (iv) the sampling frame from which blocks are selected for sampling each year, and (v) the calculated coastwide Sablefish biomass index. StRS EffortThis table contains information about the annual survey trips and fishing events (sets). Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the date, time, location and depth that fishing took place, the survey spatial and depth strata for the set, reason for the set, soak time, number of traps deployed and number of traps fished. All successful fishing events are included, i.e., those sets that conformed to specified survey standards.StRS CatchThis table contains the catch information from successful fishing events. Catches are identified to species or to the lowest taxonomic level possible. Catches are recorded as fish counts and / or weight. The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location).StRS Biological InformationThis table contains the biological data for sampled catches. Data may include any or all of length, weight, sex, maturity, and age. Most of the sampled catch is Sablefish; however, some biological information has been collected on Rockfish, Flatfish and other Roundfish species in some years. Age structures are collected and are archived until required for analyses; therefore, all existing structures have not been aged at this time. Tissue samples (usually a fin clip) may be collected for genetic (DNA) analysis for specific species. Genetic samples may be archived until required for analyses; for more information, please see the data contacts. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.Sample FrameThis table contains a list of all of the 2km x 2km grid cells or ‘fishing blocks’ that are part of the stratified random sampling frame. A subset of blocks are randomly selected for sampling each year from this list. For each grid cell, the corresponding depth and spatial strata ID is included. This sample frame can be used to calculate design-based abundance indices for the survey.StRS Biomass IndexThis table contains a coastwide relative biomass index for Sablefish based on the annual StRS survey. Stratified random sampling mean index values and 95% confidence intervals are calculated by year using the classical survey stratified random sampling estimator (Cochran 1977) and the number of possible sampling units per stratum provided by Wyeth et al. (2007). The relative biomass index has been input to the operating model and management procedure used to provide management advice for BC Sablefish since 2011 (Cox et al. 2011).

Fishing event (e.g., day, time, location, catch effort), and associated biological data from the Standardized Inlet Survey component of the annual Sablefish Research and Assessment Survey on the British Columbia coast.IntroductionDFO and the Canadian Sablefish Association undertake a collaborative fishery-independent annual research survey under a joint agreement. The survey employs longline trap gear to obtain catch rate data, gather biological samples, capture oceanographic measurements, and collect tag release and recapture data.Data summaries are provided here for standardized sets conducted at fixed stations within mainland inlets. The design of the sablefish survey has developed over time by incorporating and discontinuing components, including individual experimental studies (not available on OpenData). This Standardized Inlet Survey component differs in methodology from the other two survey components: (1) Offshore stratified random survey (2003 – present; available on OpenData using link below), and(2) Standardized trap survey – offshore indexing and offshore tagging (1990 – 2010; not yet available on OpenData). For the Standardized Inlet Survey, sets are allocated to five specific polygons in each of the following four inlet areas: Portland Inlet, Gil Island, Finlayson Channel, and Dean/Burke Channel. All four inlets were surveyed consistently between 2003 and 2019. No inlets were surveyed in 2020, and a single inlet was surveyed each year since 2021. Survey procedures are standardized and documented in Canadian Technical Reports of Fisheries and Aquatic sciences.Data tables provided for the Standardized Inlet Survey include (i) Effort, (ii) Catch, and (iii) Biological Information.Inlet EffortThis table contains information about annual survey trips and fishing events (sets). Trip-level information includes the year the survey took place, a unique trip identifier, the vessel that conducted the survey and the trip start and end dates (the dates the vessel was away from the dock conducting the survey). Set-level information includes the inlet name, date, time, location and depth that fishing took place, soak time, and number of traps deployed. All successful fishing events are included, where successful sets are those that met survey design specifications.Inlet CatchThis table contains the catch information from successful fishing events. Catch is identified to species or to the lowest taxonomic level possible. Catch is recorded as fish counts and / or weight. The unique trip identifier and set number are included so that catches can be related to the fishing event information (including capture location) for each set.Inlet Biological InformationThis table contains the biological data for sampled catches. Data may include any or all of length, weight, sex, maturity and age. Most of the sampled catch is Sablefish; however, some biological information has been collected for other species. Age structures are collected and are archived until required for analyses; therefore, all existing structures have not been aged. Tissue samples (usually a fin clip) may be collected for genetic (DNA) analysis for specific species. Tissue samples may be archived until required for analysis; for more information please see the data contacts. The unique trip identifier and set number are included so that samples can be related to the fishing event and catch information.

These datasets show the general spatial distribution of commercial fishing harvest and landed values by fishery on a 1km x 1km planning grid. They aggregate key statistics around fleet specific fishing activity and catch in British Columbia (BC) within the exclusive economic zone (EEZ). These gridded data describe the annual average landed weight (Rounded KGs), and landed catch values (CAD $2016) of the subject fishery over the period. The data represented were created from logbook records and matched to prices from fish slips submitted to DFO by participants of BC’s commercial fishing fleets. The dataset is comprised of an aggregate of all species over 10, 9, or 5 years of fishing seasons, depending on the fishery. To preserve potentially proprietary information, a privacy filtering Rule of Five has been applied to each planning unit (each 1km x 1km planning unit). If any planning units do not meet this minimum of 5 unique vessels/unique identifiers during the time span then they are flagged as being filtered and an average of all filtered planning units is applied.The accompanying GeoDB contains two data layers, “all_fisheries_filtered_gridded “, which includes all of the commercial fisheries data in 1km x 1km grids, and “DFO_marine_bioregions_NSB_subregions”, which includes polygon feature boundaries for the federal marine bioregions and Northern Shelf bioregion sub-regions.This dataset contains data for the following fisheries:- Bottom trawl (2012-2016)- Midwater trawl (2012-2016)- Shrimp by trawl (2007-2016)- Prawn trap (2007-2016)- Rockfish (2012-2016)- Sablefish (2007-2016)- Halibut (2007-2016)- Combo trips - halibut/sablefish (2007-2016)- Lingcod (2007-2016)- Green sea urchin (2006-2015)- Red sea urchin (2007-2015)- Sea cucumber (2008-2016)- Geoduck (2007-2015)

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

The basking shark (Cetorhinus maximus), is a species found in Atlantic Canadian waters which is mostly encountered “basking” on the surface waters and sometimes caught accidentally in commercial fisheries. One Pop-up Satellite Archival Tag (PSAT Mk10) from Wildlife Computers was applied to a single female basking shark in September 2008 on a commercial vessel to collect data on depth (pressure), temperature and ambient light level (for position estimation). The basking shark was 610 cm Total Length (curved). The tag released on the pre-programmed date 125 days after deployment. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployment can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

The white shark (Carcharodon carcharias), is a species found in Atlantic Canadian waters which is encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to white sharks from 2016 to the present to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada and the United States (Cape Cod and South Carolina) on scientific charters, typically in summer. Tag models deployed included: Mk10 (N=1), and MiniPAT (N=29) and 22 of 27 tags reported with 3 still at liberty. One individual shark returned to the location of tagging 1 year later and the physical tag was recovered. Another tag was recovered 5 years after deployment. White sharks tagged ranged in size from 259 cm to 459 cm Total Length (curved) estimated; 15 were female, 13 were male, and 2 were of unknown sex. Time at liberty ranged from 48 – 377 days and to date, only 3 tags remained on the shark for the programmed duration. Tagging of white sharks is an ongoing study and data will be updated here when it becomes available. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Spiny dogfish (Squlaus acanthias), is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

These data consist of the Recreational Shark Fishing Tournament landings database (1993-2022 inclusive) and the Canadian Dart tag database (2006 onwards; updated annually). Both were collected by the Maritimes Science Division of Fisheries and Oceans Canada. The landings records include biological sampling from 4266 animals and the dart tag records include 4138 tagging and 97 recapture events to date. Potential users should consult Bowlby et al. (2022) for the description, management history, and technical details pertaining to these data. Information is focused on Blue Sharks because they were the primary species captured at recreational tournaments.Cite this data as: Bowlby, H., Joyce, W. Recreational Shark Fishing Tournament Landings Data and Canadian Dart Tag Database. Published January 2023 . Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/4309f1f7-6779-416d-9660-c02f0f99b482

The contaminants in fish database is a compilation of contaminant data analysed from fish tissue at the Fresh Water Institute from 1970 to 2005. Data include lab number, region, analysis, organs, species, lake, form (whole fish, headon dressed, headless dressed), weight, and length and contaminant concentrations. Total mercury was the predominant contaminant measured. Results were expressed as ppm or ppb based on the parameter analyzed. Concentrations are expressed based on wet weight.

Herring biological (fish and sample) data as part of Herring Stock Assessment database