This inventory, conducted from September 26th to October 3th, 2019, aimed to describe the community structure of macroalgae and benthic macroinvertebrates of five small estuaries of the Upper North Shore of Quebec, namely Barthélemy Bay and the Colombier, Mistassini, Franquelin and Saint-Nicolas rivers. This inventory is part of a doctoral study of Valentine Loiseau on the global changes in the St. Lawrence system, mainly the study of marine benthic communities in response to changes of salinity, to ensure proper management of the environment in the face of future changes. The main objective is to describe the structure and the levels of specific diversities of mediolittoral communities of benthic macroinvertebrates and macroalgae along a salinity gradient. These five small estuaries were selected because of their similar size, hard substrates and easy access. Three levels of hypoosmotic stress (low, medium, high) and one control level (seawater) were used for each of the selected estuaries, with eight quadrats per stress level. Quadrat positions were randomly selected but had to meet two criteria: (1) regular height in the foreshore to control the influence of other stresses (temperature, exposure); and (2) presence of at least one macroalga to maintain homogeneity. A percentage cover by macroalgal and macroinvertebrate species was estimated, and then all organisms were weighed by species and size group. The salinity of the nearest water point was measured at mid-tide with a portable refractometer and a Castaway-type CTD (Conductivity-Temperature-Density) probe. The inventory was done using a stratified random sampling design and the sampling unit was a quadrat measuring 25 x 25 cm. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes the generic information of the quadrat, including date and location. The "additional_information_event_and_occurrence" file includes salinity and substrate type of the quadrat, as well as the total weight of all individuals of the same species caught in the quadrat extrapolated to one square metre of surface. For nudibranchs and barnacles, weight was estimated from the size of the individuals so that they were not removed from the environment. The "taxon_occurrence" file includes the taxonomic inventory of macroalgal and benthic macroinvertebrate species observed in the quadrat, identified to the lowest possible species or taxonomic level and biomass by identified species.For quality control, organisms were identified on the field using the following guide: Chabot, Robert et Anne Rossignol. 2003. Algues et faune du littoral du Saint-Laurent maritime : Guide d'identification. Institut des Sciences de la mer de Rimouski, Rimouski ; Pêches et Océans Canada (Institut Maurice-Lamontagne), Mont-Joli. 113 pages. The taxonomy was checked against the World Register of Marine Species (WoRMS) to match recognized standards and using the R obistools and worrms libraries. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. All sample locations were spatially validated. This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

Description:This dataset contains layers of predicted occurrence for 65 groundfish species as well as overall species richness (i.e., the total number of species present) in Canadian Pacific waters, and the median standard error per grid cell across all species. They cover all seafloor habitat depths between 10 and 1400 m that have a mean summer salinity above 28 PSU. Two layers are provided for each species: 1) predicted species occurrence (prob_occur) and 2) the probability that a grid cell is an occurrence hotspot for that species (hotspot_prob; defined as being in the lower of: 1) 0.8, or 2) the 80th percentile of the predicted probability of occurrence values across all grid cells that had a probability of occurrence greater than 0.05.). The first measure provides an overall prediction of the distribution of the species while the second metric identifies areas where that species is most likely to be found, accounting for uncertainty within our model. All layers are provided at a 1 km resolution.Methods:These layers were developed using a species distribution model described in Thompson et al. 2023. This model integrates data from three fisheries-independent surveys: the Fisheries and Oceans Canada (DFO) Groundfish Synoptic Bottom Trawl Surveys (Sinclair et al. 2003; Anderson et al. 2019), the DFO Groundfish Hard Bottom Longline Surveys (Lochead and Yamanaka 2006, 2007; Doherty et al. 2019), and the International Pacific Halibut Commission Fisheries Independent Setline Survey (IPHC 2021). Further details on the methods are found in the metadata PDF available with the dataset.Abstract from Thompson et al. 2023:Predictions of the distribution of groundfish species are needed to support ongoing marine spatial planning initiatives in Canadian Pacific waters. Data to inform species distribution models are available from several fisheries-independent surveys. However, no single survey covers the entire region and different gear types are required to survey the range of habitats that are occupied by groundfish. Bottom trawl gear is used to sample soft bottom habitat, predominantly on the continental shelf and slope, whereas longline gear often focuses on nearshore and hardbottom habitats where trawling is not possible. Because data from these two gear types are not directly comparable, previous species distribution models in this region have been limited to using data from one survey at a time, restricting their spatial extent and usefulness at a regional scale. Here we demonstrate a method for integrating presence-absence data across surveys and gear types that allows us to predict the coastwide distributions of 66 groundfish species in British Columbia. Our model leverages the use of available data from multiple surveys to estimate how species respond to environmental gradients while accounting for differences in catchability by the different surveys. Overall, we find that this integrated method has two main benefits: 1) it increases the accuracy of predictions in data-limited surveys and regions while having negligible impacts on the accuracy when data are already sufficient to make predictions, 2) it reduces uncertainty, resulting in tighter confidence intervals on predicted species occurrences. These benefits are particularly relevant in areas of our coast where our understanding of habitat suitability is limited due to a lack of spatially comprehensive long-term groundfish research surveys.Data Sources:Research data was provided by Pacific Science’s Groundfish Data Unit for research surveys from the GFBio database between 2003 and 2020 for all species which had at least 150 observations, across all gear type and survey datasets available.Uncertainties:These are modeled results based on species observations at sea and their related environmental covariate predictions that may not always accurately reflect real-world groundfish distributions though methods that integrate different data types/sources have been demonstrated to improve model inference by increasing the accuracy of the predictions and reducing uncertainty.

Funded under DFO's Marine Conservation Targets Program in partnership with the Huntsman Marine Science Centre (HMSC), this diver-based imagery and sample collection benthic survey documents the occurrence of sponges at 42 dive sites in the Eastern Shore Islands (ESI) Area of Interest (AOI, ~2089 km2) off the Atlantic coast of Nova Scotia, Canada from dive surveys conducted in summer 2021 and 2022. Water quality, species occurrences and counts, habitat, slope, and substrate characteristics were catalogued through diver log sheets, camera imagery, specimen vouchers, and high-resolution bathymetric data. A total of 54 dives to depths from 11 to 33 m (below sea level), collecting up to 147 still images, one-hour of video, and 17 specimen samples per site, resulted in 220 observations for 27 different sponge taxa. This included three new records for Canada (Hymedesmia stellifera, Plocamionida arndti, Hymedesmia jecusculum) and a range extension for a species new to science (Crellomima mehqisinpekonuta) which was recently described from the Bay of Fundy. There were also four species which may seem to be new to science (Halichondria sp., Hymedesmia sp., Protosuberires sp., and Sphaerotylus sp.). Sponges were found to occupy a diversity of micro-habitats, often several different ones in proximity. A total of eight distinct habitat classes were defined, based on varying abundances and diversity of sponges and associated benthic species. These are likely widely distributed among the many complex submerged seabed features within this AOI. Collected specimens were preserved and are stored at the Atlantic Reference Centre (ARC) in St. Andrew's, New Brunswick.Cite this data as: Goodwin, C., Cooper, J.A., Lawton, P., Teed, L.L. 2025. Sponge occurrence and associated species and habitat descriptions derived from the 2021 and 2022 SCUBA diving surveys in the Eastern Shore Islands Area of Interest, Nova Scotia. Version 1.4. Fisheries and Oceans Canada. Occurrence dataset. https://ipt.iobis.org/obiscanada/resource?r=eastern_shore_islands_sponge_survey_2021_2022&v=1.4

Description:Seasonal climatologies for salinity of the Northeast Pacific Ocean were computed to cover the period 2001 to 2020. Historibal observations included all available conductivity-temperature_depth (CTD), bottle and profiling floats in the NODC World Ocean Database, Marine Environmental Data Services (MEDS), Institute of Ocean Sciences Water Properties website and the Canadian Integrated Ocean Observing System (CIOOS Pacific).Methods:Interpolation was carried out in up to fifty-two vertical levels from surface to 5000m. Data-Interpolating Variational Analysis (DIVA) was used for spatial interpolation for all years within each season and estimates projected onto a consistent grid. The average of the grid nodes was calculated to obtain the seasonal climatology. DIVA was used again on the final climatology followed by a median filter and a 5-point smoother. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal salinity climatology for the Canadian Pacific Exclusive Economic Zone (EEZ), a subset of seasonal climatology of the Northeast Pacific Ocean, with high spatial resolution of 1/300 degree.Data Sources:NODC, MEDS, IOS and CIOOS Pacific Data.Uncertainties:Uncertainties are introduced when quality controlled observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values.

This file contains a generalized representation of watersheds developed from the 1:50,000 BC Watershed Atlas with each region coded for occurrence of freshwater fish species (including anadromous salmon in their freshwater stages). The initial fish species codes for presence/absence in each watershed were derived from an GIS overlay of fish species occurrences within broadly defined fish regions for BC. This overlay of fish ranges describes the occurrences of fish species in 30 regions throughout the province. These broad species ranges were derived from McPhail and Carveth's 'Key to Freshwater Fish of BC' and refined further based on the most current expert opinion. Coding for watershed polygons based on this expert opinion was originally: 0= out of species range; 4 = core range; 5= introduced range; 6= peripheral range; 9= estuarine polygons only. A further refinement of watershed fish species coding was developed from actual observations of fish species in the lakes and rivers of British Columbia. This data comes from a number of fish inventory sources. Watersheds with known records of occurrence for each fish species were consequently recoded as such: 4, 5, 6, 9 now equal '1' if a museum record, and, 4, 5, 6, 9 now equal '2' for a less reliable record, and, 0 now equals '8'. for an out-of range record

The documented occurrence data package contains 3 datasets that, in combination, help to provide generalized information about woodland caribou locations and survey areas in Saskatchewan. This information may assist users in their efforts to avoid or mitigate impacts to woodland caribou when operating in woodland caribou range. Generalized locations of caribou use have been provided to better reflect their large home ranges. Absence of a hexagon in an area should not be interpreted as absence of woodland caribou.Please read the Data Guide for important information about this product. Download survey boundaries, telemetry occurrence, and sightings/sign. Download the full package, including data guide here. The Woodland Caribou Documented Occurrence public data product is composed of three shapefiles/feature classes: 1. Woodland Caribou Occurrence - Sighting and Sign 2. Woodland Caribou Occurrence - Telemetry 3. Woodland Caribou Survey Boundaries The two occurrence datasets contain a grid of 18 sq km hexagons (tessellation). The inclusion of a hexagon in the dataset indicates that one or more animal sightings or sign, or telemetry points have been documented in that area. Importantly, lack of caribou occurrence (e.g. no hexagon) should not be interpreted as absence of woodland caribou. Rather, data may not have been collected in these areas or incidental or other observations have not been received.   The survey boundaries dataset displays the boundaries of woodland caribou surveys that were completed by or in collaboration with the Ministry of Environment from 2005 to 2024. Boundaries are from multiple sources, and include various types of surveys (fecal pellet collection or telemetry). These boundaries provide context when viewed alongside the woodland caribou occurrence datasets. We expect to see more occurrence locations in areas that have been surveyed. This information may provide context to areas with a seemingly higher number of occurrences.  For a full description of the data, please refer to the Data Guide document available for download on the Saskatchewan GeoHub.

This dataset provides marine bacteriological water quality data for bivalve shellfish harvest areas in Prince Edward Island, Canada. Shellfish harvest area water temperature and salinity data are also provided as adjuncts to the interpretation of fecal coliform density data. The latter is the indicator of fecal matter contamination monitored annually by Environment and Climate Change Canada (ECCC) within the framework of the Canadian Shellfish Sanitation Program (CSSP). The geospatial positions of the sampling sites are also provided. These data are collected by ECCC for the purpose of making recommendations on the classification of shellfish harvest area waters. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO).This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/6417332a-7f37-49bd-8be9-ce0402deed2a

This dataset provides marine bacteriological water quality data for bivalve shellfish harvest areas in New Brunswick, Canada. Shellfish harvest area water temperature and salinity data are also provided as adjuncts to the interpretation of fecal coliform density data. The latter is the indicator of fecal matter contamination monitored annually by Environment and Climate Change Canada (ECCC) within the framework of the Canadian Shellfish Sanitation Program (CSSP). The geospatial positions of the sampling sites are also provided. These data are collected by ECCC for the purpose of making recommendations on the classification of shellfish harvest area waters. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO).This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/6417332a-7f37-49bd-8be9-ce0402deed2a

This dataset provides marine bacteriological water quality data for bivalve shellfish harvest areas in Quebec, Canada. Shellfish harvest area water temperature and salinity data are also provided as adjuncts to the interpretation of fecal coliform density data. The latter is the indicator of fecal matter contamination monitored annually by Environment and Climate Change Canada (ECCC) within the framework of the Canadian Shellfish Sanitation Program (CSSP). The geospatial positions of the sampling sites are also provided.These data are collected by ECCC for the purpose of making recommendations on the classification of shellfish harvest area waters. ECCC recommendations are reviewed and adopted by Regional Interdepartmental Shellfish Committees prior to regulatory implementation by Fisheries and Oceans Canada (DFO).This dataset is 'Deprecated'. Please use updated source here.https://open.canada.ca/data/en/dataset/6417332a-7f37-49bd-8be9-ce0402deed2a

To support the surveillance of key macroalgae and non-indigenous species in Nova Scotia and New Brunswick, five quantitative PCR (qPCR) assays were designed and tested at 111 sites in 2022-2023 targeting the following non-indigenous macroalgal species: Antithamnion sparsum, Bonnemaisonia hamifera, Codium fragile, Dasysiphonia japonica, Fucus serratus. All assays were developed in 2022 by the Center for Environmental Genomics Applications (CEGA, Newfoundland, Canada) except Antithamnion sparsum, for which an assay was developed in 2023 by the Aquatic Biotechnology Laboratory (ABL) at the Bedford Institute of Oceanography. All amplification was performed by the ABL in 2022-2023. The assay developed for Fucus serratus was later determined to be non-specific, and amplifies both F. serratus and Fucus distichus.Cite this data as: Krumhansl K, Brooks C, Lowen B, DiBacco C, (2025). Quantitative PCR (qPCR) of Key Macroalgal Non-Indigenous Species in Nova Scotia and New Brunswick Waters. Version 1.5. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=quantitative_qpcr_macroalgal_nonindigenous_species_novascotia_newbrunswick_2022_2023&v=1.5For additional information please see:LeBlanc F., Belliveau V., Watson E., Coomber C., Simard N., DiBacco C., Bernier R., Gagné N. 2020. Environment DNA (eDNA) detection of marine aquatic invasive species (AIS) in Eastern Canada using a targeted species-specific qPCR approach. Management of Biological Invasions 11(2):201-217Krumhansl K.A., Brooks C.M., Lowen B., O’Brien J., Wong M., DiBacco C. Loss, resilience and recovery of kelp forests in a region of rapid ocean warming. Annals of Botany 2024 Mar 8; 133(1):73-92Brooks C.M., Krumhansl K.A. 2023. First record of the Asian Antithamnion sparsum Tokida, 1932 (Ceramiales, Rhodophyta) in Nova Scotia, Canada. BioInvasions Records 12(3):745-725.