This data set includes the locations of all known seabird colonies along the coast of British Columbia, and provides a compilation of the population estimates of seabirds breeding at those colonies since 1980, and historical estimates prior to 1980 for some colonies. It does not include an estimate of the numbers of juvenile birds or non-breeders in the population.The rationale for developing this inventory was the recognized need for a product that could assist with: coastal zone and conservation area planning; emergency response to environmental emergencies and identifying areas of potential interactions between seabirds and anthropogenic activities. In addition, the data used to develop the document provides a baseline to compare with future seabird population estimates in order to measure the impacts of shifts in composition, abundance and/or distribution of prey, and climatic and oceanographic changes. The database is not a substitute for on-site surveys usually required for environmental assessment.Here we present data on the breeding colony population estimates of the 17 species of seabirds (including two storm petrels, three cormorants, one gull, and eight alcids) and one shorebird (Black Oystercatcher Haematopus bachmani) that breed on the coast of British Columbia. Over 5.5 million colonial birds are currently estimated to nest at 649 sites (Rodway et al. 2024). Five species (Cassin's Auklets Ptychoramphus aleuticus, Fork-tailed Storm-petrels (Hydrobates fucatus), Rhinoceros Auklets Cerorhinca monocerata, Ancient Murrelets Synthliboramphus antiquus, and Leach's Storm-petrels (Hydrobates leucorhous), comprise the vast majority of that population, although Black Oystercatchers (Haematopus bachmani), Pigeon Guillemots (Cepphus columba), and Glaucous-winged Gulls (Larus glaucescens), nest at the most sites. Marbled Murrelets (Brachyramphus marmoratus), which nest on the mossy limbs of mature and old-growth trees within the coastal forests, are not included in this database, due to their dispersed nesting habit.The population estimates presented in this database are compiled from the results of several surveys. Many of the seabird breeding colonies in British Columbia have been known for more than 50 years, but because of the remoteness of the sites, visits to them have been rare. The majority of the data are the results of comprehensive inventories of colonial nesting seabirds along the British Columbia coastline conducted between 1974 and 1977 by the British Columbia Provincial Museum (BCPM; now Royal British Columbia Museum ) and between 1980 and 1989 by the Canadian Wildlife Service of Environment and Climate Change Canada (CWS). The goal of the BCPM surveys was to explore the entire BC coast to identify seabird nesting sites. Reliable, quantitative data were gathered on the breeding populations of all surface-nesting seabird species and rough estimates of population sizes were made for burrow-nesting species. The goal of the CWS survey program was to establish baseline estimates of breeding populations of burrow-nesting species in BC using standardized survey techniques to allow future comparisons and monitoring of those populations. During the 1980s, repeat surveys of surface-nesting species were also conducted by CWS in most regions of the BC coast. A few colonies on small remote islands were not visited during those surveys. Therefore, for some colonies the most current population estimates are from the first complete survey of the BC coastline, carried out by the Royal British Columbia Museum in the mid 1970’s.Since 1989, surveys have been conducted by CWS on some alcid, cormorant and gull colonies along the BC coast, and results have been included in the dataset (data entry ongoing). As well as data from CWS surveys, we have attempted to obtain recent data from all other sources including Parks Canada, Transport Canada, the BC Ministry of Forests, Lands, Natural Resource Operations and Rural Development, the City of Vancouver, the Bamfield Marine Station, and the Laskeek Bay Conservation Society. Since 2000, inventories of nesting BlackOystercatchers have been conducted in some regions of the coast by Parks Canada and partners (Gulf Islands National Park Reserve, Pacific Rim National Park Reserve, and Gwaii Haanas National Park Reserve) and results have been included in the dataset (data entry ongoing). A long time series of nesting Black Oystercatcher data collected by Laskeek Bay Conservation Society in the Laskeek Bay area of the East Coast of Moresby Island has also been included in this dataset.

The atlas provides printable maps, Web Services and downloadable data files representing seabirds at-sea densities in eastern Canada.The information provided on the open data web site can be used to identify areas where seabirds at sea are found in eastern Canada. However, low survey effort or high variation in some areas introduces uncertainty in the density estimates provided. The data and maps found on the open data web site should therefore be interpreted with an understanding of this uncertainty.Data were collected using ships of opportunity surveys and therefore spatial and seasonal coverage varies considerably. Densities are computed using distance sampling to adjust for variation in detection rates among observers and survey conditions. Depending on conditions, seabirds can be difficult to identify to species level. Therefore, densities at higher taxonomic levels are provided. more details in the document: Atlas_SeabirdsAtSea-OiseauxMarinsEnMer.pdf.By clicking on "View on Map" you will visualize a example of the density measured for all species combined from April to July - 2006-2020. ESRI REST or WMS map services can be added to your web maps or opened directly in your desktop mapping applications. These are alternatives to downloading and provide densities for all taxonomical groups and species as well as survey effort.

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-present). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. However, comparative analyses have been carried out between vessels, and conversion factors are available on request for a number of species. The specificities of the missions onboard the CCGS Teleost are described below.Objectives:1. Assess groundfish and northern shrimp population abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna 4. Assess phytoplankton and mesozooplankton abundance5. Monitor the pelagic ecosystem6. Inventory marine mammals populations7. Inventory seabirds populations8. Collect samples for various research projectsSurvey descriptionThe survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary in order to sample the depths between 37 and 183 m. A stratified random sampling strategy is used for this survey and the area of the study area is 118,587 km². The fishing gear used on the CCGS Teleost is a four-sided Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The target towing speed is 3 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, Greenland halibut, and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a a “Carbio” file containing biological and morphometric measurements per individual and a “Shrimps” file containing information on shrimp catches.It's important to note that this is raw data. Only set considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

PURPOSE:This data relates to the Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process from the Limit Reference Point and Population Model Review of the Southern Gulf of Saint Lawrence Sea Scallop peer review meeting held on November 1-2, 2023. The SFAs 22 and 24 have been identified as the core scallop habitat within the sGSL for this process. Associated publications from this meeting will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available. DESCRIPTION:Data on landings, fishing efforts, and catch per unit effort (CPUE) used in the stock assessment for southern Gulf of St. Lawrence (sGSL) sea scallop (_Placopecten magellanicus_) stock assessments and the limit reference point.The dataset contains corrected information from the following data sources:- DFO annual historic reports on landings and efforts- published documents about population assessments and surveys- logbooks, produced by DFO’s regional statistics- purchase slips, produced by DFO’s regional statistics- Catch per unit effort calculated by DFO's Science BranchPrior to 1947, data represents the combined landings that cannot be attributed to individual Scallop Fishing Areas (SFAs). USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

This dataset was compiled as part of a multiyear effort lead by Fisheries and Oceans Canada (DFO) to support sustainable aquaculture regulation in the Coast of Bays, an area of the south coast of Newfoundland. It is the second of a series aiming to provide an oceanographic knowledge baseline of the Coast of Bays.This dataset includes temperature, salinity, and dissolved oxygen concentration profiles collected during CTD surveys, each survey containing a varying number of casts/profiles taken within the area of interest. In total, 760 profiles from 11 surveys, executed over 276 stations, were collected from June 2009 to November 2013. Data were processed and quality controlled using the instrumentation manufacturer guidelines, custom tools as well as visual inspection. Data are provided in tab-delimited text-based format compatible with most data processing language and tools (e.g. MS. Excel) as well as with the Ocean Data View software (https://odv.awi.de/) for rapid visualisation. A summary of the CTD profiles and stations surveyed is also provided as a comma separated values (CSV) file.A full description of the data and of its use in the context of the motivating project can be found in http://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2017/2017_077-eng.html. Analyses from this dataset were presented during a Canadian Science Advisory Secretariat (CSAS) meeting which took place in St John’s in March 2015 (http://www.dfo-mpo.gc.ca/csas-sccs/schedule-horraire/2015/03_25-26b-eng.html) and from which a Science Advisory Report (http://www.dfo-mpo.gc.ca/csas-sccs/Publications/SAR-AS/2016/2016_039-eng.html) and Proceedings (http://www.dfo-mpo.gc.ca/csas-sccs/Publications/Pro-Cr/2017/2017_043-eng.html) were published.

The distribution of unspecified waterfowl habitat in coastal British Columbia showing relative abundance (RA) by season and overall relative importance (RI). RI is based on project region and not on the province as a whole. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

Marine classification schemes based on abiotic surrogates often inform regional marine conservation planning in lieu of detailed biological data. However, theses chemes may poorly represent ecologically relevant biological patterns required for effective design and management strategies. We used a community-level modeling approach to characterize and delineate representative mesoscale (tens to thousands of kilometers) assemblages of demersal fish and benthic invertebrates in the North-west Atlantic. Hierarchical clustering of species occurrence data from four regional annual multispecies trawl surveys revealed three to six groupings (predominant assemblage types) in each survey region, broadly associated with geomorphic and oceanographic features. Indicator analyses identified 3–34 emblematic taxa of each assemblage type. Random forest classifications accurately predicted assemblage dis-tributions from environmental covariates (AUC > 0.95) and identified thermal limits (annual minimum and maximum bottom temperatures) as important pre-dictors of distribution in each region. Using forecasted oceanographic conditions for the year 2075 and a regional classification model, we projected assemblage dis-tributions in the southernmost bioregion (Scotian Shelf-Bay of Fundy) under ahigh emissions climate scenario (RCP 8.5). Range expansions to the north eastare projected for assemblages associated with warmer and shallower waters of the Western Scotian Shelf over the 21st century as thermal habitat on the rela-tively cooler Eastern Scotian Shelf becomes more favorable. Community-level modeling provides a biotic-informed approach for identifying broadscale ecolog-ical structure required for the design and management of ecologically coherent, representative, well-connected networks of Marine Protected Areas. When com-bined with oceanographic forecasts, this modeling approach provides a spatial tool for assessing sensitivity and resilience to climate change, which can improve conservation planning, monitoring, and adaptive management.Cite this data as: O'Brien, J.M., Stanley, R.R.E., Jeffery, N.W., Heaslip, S.W., DiBacco, C., and Wang, Z. Demersal fish and benthic invertebrate assemblages in the Northwest Atlantic.Published: December 2024. Coastal Ecosystems Science Division, Maritimes region, Fisheries and Oceans Canada, Dartmouth NS.https://open.canada.ca/data/en/dataset/14d55ea5-b17d-478c-b9ee-6a7c04439d2b

Benthic Marine Ecounits in coastal and offshore British Columbia. Benthic ecounits are intended to describe the sea bed and nearshore. Seven variables were selected to derive benthic ecounits: 1. Depth; 2. Slope; 3. Relief; 4. Temperature; 5. Exposure; 6. Current and 7. Substrate. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

Spiny dogfish (Squlaus acanthias), is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.