Time series of dissolved inorganic nutrients (nitrate, silicate, phosphate) (mmol/m2) at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility.The mean integrated nutrient data of 2 strata (0-50 m) et (50-150 m) from the last ten years are displayed as 12 layers, 6 for the June survey (2013-2022, 2020 not sampled) and 6 for the autumn survey (2013-2022). Finally, 2 other layers shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski).Each station is linked with a .png file showing the time series of nutrients and with a .csv file containing all the integrated nutrient data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth_min/Profondeur_min(m), Depth_max/Profondeur_max(m), Integrated_Nitrate/Nitrate_intégré(mmol/m²), Integrated_Phosphate/Phosphate_intégré(mmol/m²), Integrated_Silicate/Silice_intégrée(mmol/m²)).PurposeThe Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.Supplemental InformationWater sampling for nutrients analysis is done from Niskin bottles according to AZMP sampling protocol:Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Mean 2014 to 2023 winter surface conditions in the Estuary and Gulf of St. Lawrence. The survey has been taking place every year in March. Surface conditions are described by temperature, salinity and nutrient concentration (mmol/m3) interpolated on a 10km x 10km grid.PurposeSince many years, the Department of Fisheries and Oceans Canada (DFO) has been conducting annual surveys, at different periods of the year, in the Estuary and Gulf of St. Lawrence, each having many objectives including assessment of environmental conditions.However, these surveys, carried out on vessels, did not cover the winter period. Since 1996, a regional monitoring program, conducted by Maurice-Lamontagne Institute scientists, is taking place in order to fill this gap. The annual helicopter survey is undertaken in the beginning of March to evaluate physical oceanographic conditions of waters up to 200 m and surface water nutrient contains.These surveys are usually sampled from a Canadian Coast Guard helicopter but from an icebreaker in 2016 and 2017.Data from regional monitoring programs are combined with the ones from the Atlantic Zone Monitoring Program (AZMP) to produce annual reports (physical, biological and a Zonal Scientific Advice) which are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).Galbraith, P.S., Chassé, J., Caverhill, C., Nicot, P., Gilbert, D., Pettigrew, B., Lefaivre, D., Brickman, D., Devine, L., and Lafleur, C. 2017. Physical Oceanographic Conditions in the Gulf of St. Lawrence in 2016. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/044. v + 91 p.Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.Additional InformationWater sampling for nutrient analysis is done from Niskin bottles according to AZMP sampling protocol:Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.Nitrate titration is carried out according to the following method ((nitrite + nitrate) – nitrite): Nitrite + nitrate: Armstrong, FAJ, CR Stearns, JDH Strickland (1967) The measurement of upwelling and subsequent biological processes by means of the Technicon Autoanalyzer and associated equipment. Deep-Sea Res 14(3) 381-389.Nitrite: American Public Health Assoc. (1971) Standard Methods for the examination of water and wastewater. 13th edition, pp. 240-243, Washington D.C.Phosphate: Murphy, J, JP Riley (1962) A modified single solution method for the determination of phosphate in natural waters. Anal Chim. Acta 27 : 30.Silicate: Strickland, JDH, TR Parsons (1972) A Practical Handbook of Seawater Analysis, second edition. Fish Res Board Can, Bulletin 167, 310 pp.The surface water temperature and salinity are determined from CTD profiles.

The objective of this project was to locate the mixing zones in the coastal environment on the north shore of the lower estuary, which are caused by the friction of the waters on the bottom and measure the effects of these mixing zones on the modification of the water bodies and the productivity potential of adjacent areas, using phytoplankton biomass and size structure as an indicator of productivity. Temperature and salinity profiles were measured using CTD and water sampling was done with a Niskin bottle to try to detect the signature of the mixture and to determine if nutrient salts and/or productivity are greater in adjacent areas.Sampling took place in 3 outings from 3 stations organized in a 100 NN transect which were carried out at the start of the season (June 30), mid-season (August 16) and end of the season (October 9). The transects were each composed of three stations ranging from 10 m depth near the coast to 50 and 75 m, depending on the transect, moving away from the coast. Samples were collected for nutrients and phytoplankton biomass (> 0.7 µm and > 5 µm) analysis at depths of 1, 10, 25 and 50 m. The optical transparency of water was also measured by Secchi disk. The first file provided “donnees_profils_data” is a summary of the CTD profils of every station. The second file “donnees_discretes_discret_data” contains the results of the water sample analysis. The file “Identification_station_identification” describe the repartition of consecutives among stations.This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

The data represents the occurrence of saline soils in the agricultural area of Alberta. A Saline Soils is a non-alkali (pH less than 8.5 and exchangeable-sodium less than 15%) soil containing soluble salts in great enough quantities that they interfere with the growth of most crop plants. This resource was created in 2002 using ArcGIS.

Patterns of wet deposition of the nitrate (NO3), non-sea-salt sulfate (xSO4) and ammonium (NH4) ions across areas of Canada and the United States are based on measurements of precipitation depth and ion concentrations in precipitation samples. xSO4 refers to the wet deposition of sulfate with the sea-salt sulfate contribution removed at coastal sites. These measurements were collected and quality controlled by their respective networks: in Canada, the federal Canadian Air and Precipitation Monitoring Network (CAPMoN) and provincial or territorial networks in Alberta, New Brunswick, the Northwest Territories, Nova Scotia, Ontario and Quebec. In the United States, wet deposition measurements were made by two coordinated networks: the National Atmospheric Deposition Program (NADP) / National Trends Network (NTN) and the NADP/Atmospheric Integrated Research Monitoring Network (AIRMoN). Only data from sites that were designated as regionally representative were used in the mapping. Wet deposition amounts were interpolated by ordinary kriging using ArcMap Geostatistical Analyst. The map is limited to the contiguous U.S. and southeastern or southern Canada because outside that region, the interpolation error exceeds 30% due to the larger distances between stations. Links to annual and five-year average maps are available in the associated resources.

The "Agri-Environmental Indicator Risk of Soil Salinization" dataset estimates the risk of accumulation of soluble salts on agricultural lands in the Canadian Prairies. At high levels, the accumulation of these salts in soil and groundwater in the landscape can inhibit the growth of many plant species.

Phytoplankton species abundance (cell/L) and oceanographic conditions (temperature, salinity, chlorophylle-a (mg/m³) for some years and nutrient content (mmol/m³)) at stations of the Harmful Algae Monitoring Programme (HAMP) from1994 to 2016.The layer presents the station positions of the HAMP. Two files are attached to each station: one containing the cell counts and the second the oceanographic conditions.PurposeThe summer growth of many toxic and harmful microalgae species poses a serious threat for the public health and commercial or recreational exploitation of some marine species.The Department of Fisheries and Oceans (DFO) initiated the Harmful Algae Monitoring Programme (HAMP) in 1989 in order to complete the monitoring program for paralytic shellfish poisoning (PSP). Under the responsibility of Maurice-Lamontagne Institute scientists, the HAMP is to monitor, by means of a coastal station network, the natural occurrence of toxic and harmful algae in the St. Lawrence in order to determine their spatio-temporal distribution and the environmental conditions leading to their bloom.The network is made up of 11 coastal stations which are sampled every week from April to November and which are established along Quebec eastern shores. It extends from Tadoussac to Tête-à-la-Baleine on the St. Lawrence north shore and from Sainte-Flavie to Carleton on the south shore along the Gaspé peninsula. Another station is located in Havre-Aux-Maisons, Magdalen Islands.The HAMP was discontinued in 2010 but opportunistic samplings are still done at some stations.Additional informationThe sampling and analysis protocol is described in details in the following publication apart from the fact that the number of identified and counted species significantly has been increasing with time. Phytoplankton samples are preserved in a lugol solution.Blasco D., M. Levasseur, R. Gélinas, R. Larocque, A.D. Cembella, B. Huppertz et E. Bonneau.1998. Monitorage du phytoplancton toxique et des toxines de type IPM dans les mollusques du Saint-Laurent: 1989 à 1994. Rapp. stat. can. hydrogr. sci. océan. 15 1 : x i-117 p.

Each summer, environmental community groups collect important data to determine if groupings of fish, shrimp and crab – what is called a community- can be used as an indicator of the health status of bays and estuaries. Sampling was conducted from May through September for the first years then from June through August. In 2018 and 2019, the sampling was conducted just once in each estuary. Community group members and staff sample six stations once a month in their designated estuary.Fish, shrimps and crabs are collected with a beach seine net and later released live back to the water once identified and counted. From this, the community groups provide important information to Fisheries and Oceans Canada, including:- identification and numbers of fish, shrimp and crab species;- water conditions and samples;- information on aquatic plants;- sediment samples.With this information, Fisheries and Oceans Canada scientists working with government agencies and universities can conduct analyses to determine the suitability of indicators to assess the health of bays and estuaries.PARAMETERS COLLECTED:Parameters: abundance, species richness, species developmental stage (young-of-the-year or adult), water temperature, water salinity, water dissolved oxygen, dissolved inorganic nutrient (nitrate, nitrite, phosphate), sediment % organic content, sediment % humidity content and sediment mean grain size, % submerged aquatic vegetation coverNOTES ON QUALITY CONTROL:Data entry into Excel and first quality control verification is done by CAMP summer students. A second quality control verification is done by DFO staff. See publ # 2823 attached to this record.In 2018, the historical data was migrated into a relationship database. From this year on, annual data will be entered into the database using a custom application. The application front end has numerous QC elements built-in.SAMPLING METHODS:Please see the following URL for sampling details: http://www.dfo-mpo.gc.ca/Library/319437.pdf

Bay-scale empirical demonstrations of how bivalve aquaculture alters plankton composition, and subsequently ecological functioning and higher trophic levels, are lacking. Temporal, inter- and within-bay variation in hydrodynamic, environmental, and aquaculture pressure limit efficient plankton monitoring design to detect bay-scale changes and inform aquaculture ecosystem interactions. Here, we used flow cytometry to investigate spatio-temporal variations in bacteria and phytoplankton (< 20 µm) composition in four bivalve aquaculture embayments. We observed higher abundances of bacteria and phytoplankton in shallow embayments that experienced greater freshwater and nutrient inputs. Depleted nutrient conditions may have led to the dominance of picophytoplankton cells, which showed strong within-bay variation as a function of riverine vs freshwater influence and nutrient availability. Although environmental forcings appeared to be a strong driver of spatio-temporal trends, results showed that bivalve aquaculture may reduce near-lease phytoplankton abundance and favor bacterial growth. We discuss aquaculture pathways of effects such as grazing, benthic-pelagic coupling processes, and microbial biogeochemical cycling. Conclusions provide guidance on optimal sampling considerations using flow cytometry in aquaculture sites based on embayment geomorphology and hydrodynamics.Cite this data as: Sharpe H, Lacoursière-Roussel A, Barrell J (2024). Monitoring bay-scale bivalve aquaculture ecosystem interactions using flow cytometry. Version 1.2. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=monitoring_bay-scale_bivalve_aquaculture_ecosystem_interactions_using_flow_cytometry&v=1.2

Mean 2013 to 2022 summer surface conditions in the Estuary and Gulf of St. Lawrence. Data come from the August and the September multidisciplinary surveys. Surface conditions are described by temperature, salinity and nutrient concentration (mmol/m³) interpolated on a 10 km x 10 km grid.PurposeSince 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources.The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling.The southern Gulf surveys are realized using the following standardized protocol:Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p.The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications:Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p.Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.