Site locations of aquatic invasive species occurrences throughout the province. The aquatic invasive species include species of amphibians, fishes, invertebrates, plants, alga and turtles. This spatial dataset was compiled from a number of data sources including The Invasive Plant Council of BC; the Beaty Biodiversity Museum; the Royal BC Museum; the Fisheries Information Summary System; E-Flora BC; Electronic Atlas of Plants of BC; and from private data compilations(spreadsheets) and personal consultation with BC Ministry of Environment staff and other local experts, peer-reviewed articles and other unpublished technical reports. Full Citations are included

The data represent the distribution of species of amphibians, reptiles, reptiles, terrestrial mammals and freshwater and migratory fish in Quebec.The files represent:amphibians: 21 speciesterrestrial mammals: 69 speciesfreshwater and migratory fish: 118 speciesreptiles: 17 speciesThe ranges were established on the basis of various sources of information and validated by the Main Directorate of expertise on terrestrial fauna (DPEFT), the Main Directorate for Threatened or Vulnerable Species (DPEMV) and the Main Directorate of Expertise on Aquatic Wildlife (DPEFA) of the Ministry of the Environment, the Fight against Climate Change, Climate Change, Wildlife and Parks (MELCCFP).The ranges of species of _freshwater and migratory fish_ are also illustrated in the [“Freshwater Fish of Quebec”] poster (https://cdn-contenu.quebec.ca/cdn-contenu/faune/documents/animaux/affiche-poissons-eau-douce.pdf). Some ranges have been slightly modified since they were included in the poster.__There may be differences between the ranges of the species shown in the files and the current spatial distribution of the species. __The distribution areas were produced on a small scale; they provide indicative information on the presence of the species in Quebec.The cards are the property of MELCCFP.__Atten:__ The ranges of marine mammals that frequent the coasts of the province of Quebec are not included in this dataset.**This third party metadata element was translated using an automated translation tool (Amazon Translate).**

The health of individual amphibians, amphibian populations, and their wetland habitats are monitored in the oil sands region and at reference locations. Contaminants assessments are done at all sites. Amphibians developing near oil sands activities may be exposed to concentrations of oil sands-related contaminants, through air emissions as well as water contamination. The focus of field investigations is to evaluate the health of wild amphibian populations at varying distances from oil sands operations. Wood frog (Lithobates sylvaticus) populations are being studied in Alberta, Saskatchewan and the Northwest Territories in order to examine the relationship of proximity to oil sands activities and to prevalence of infectious diseases, malformation rates, endocrine and stress responses, genotoxicity, and concentrations of heavy metals, naphthenic acids and polycyclic aromatic hydrocarbons.

An exploratory project on the taxonomic and genetic diversity of decapods in three ocean subregions (Northeast Pacific, Canadian Arctic, and Northwest Atlantic), which were sampled in 2022, was undertaken by the Arctic Working Group under the Canada-U.S. Fisheries and Climate Collaboration between Fisheries and Oceans Canada (DFO) and the National Marine Fisheries Service (NMFS) of the National Oceanic and Atmospheric Administration (NOAA). This collaboration framework aims to pool Canadian and U.S. data to explore the impacts of broad-scale climate change on marine biodiversity. In early summer 2022, a sampling protocol with the selection of targeted decapods was provided to DFO and NOAA collaborators. Targeted genera were collected from a total of 10 research programs across three ocean subregions and four marine regions. The Northeast Pacific samples were collected in the Bering Sea during the Northern Bering Sea Ecosystem and Surface Trawl Survey, and the Eastern and Northern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Fauna onboard the F/V Northwest Explorer, F/V Alaska Knight and F/V Vesteraalen. In the Western Canadian Arctic (mainly from Beaufort Sea and Amundsen Gulf), specimens were collected during DFO’s Canadian Beaufort Sea – Marine Ecosystem Assessment (CBS-MEA) survey onboard the F/V Frosti. In Eastern Canadian Arctic (mainly from Baffin Bay and Davis Strait), specimens were collected during DFO’s Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) survey onboard the CCGS Amundsen and DFO’s North Atlantic Fisheries Organization (NAFO) Subarea 0B survey onboard the R/V Tarajoq. In the Estuary and Gulf of St. Lawrence (EGSL), specimens were collected from coastal surveys (scallops, sea cucumber, snow crab, and whelk surveys) onboard the CCGS Leim and offshore during the Ecosystemic Survey onboard the CCGS Teleost. Decapods were collected from various sampling gears (benthic beam trawl, modified Atlantic Western IIA otter trawl, Bacalao trawl, shrimp trawl, Digby scallop dredge, or modified sea cucumber dredge) and identified to the lowest possible taxonomic level and photographed, when possible. All specimens were frozen at sea (n = 995). In the lab, the identifications were validated or refined with the photos and the frozen specimens. DNA was extracted for 87 specimens and a section of COI gene was amplified in order to be sequenced using Sanger method. Sequences were compared with existing data using The Basic Local Alignment Search Tool (BLAST) in the National Center for Bio-technology Information Nucleotide database (NCBI-nt, including the GenBank database) to compare scientific names, where available.The present dataset includes 391 decapod species occurrences. DNA was extracted for a subset of 87 specimens (COI gene); sequences are publicly available on BOLD data portal under project code DDAO (see supporting document "citations_references.csv" for more information).The data are presented in Darwin Core format and are separated in three files:The "Activité_décapodes_DDAO_decapods_event_en" file contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The "Occurrence_décapodes_DDAO_decapods_en" file contains the taxonomic occurrences.The "ADN_décapodes_DDAO_decapods_DNA_en" file contains the DNA derived data.For further details, please refer to the technical report available in the supporting document named "citations_references.csv". USE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

This resource documents a dataset of epifauna occurrences collected in 2021 during The Knowledge and Ecosystem-Based Approach in Baffin Bay (KEBABB) program developed by the Department of Fisheries and Oceans Canada (DFO) in collaboration with university partners. The overall objective of KEBABB is to characterize the variability and trends in physical, chemical, and biological oceanographic conditions and food webs supporting fisheries in the connected ecosystems of western Baffin Bay and Lancaster Sound. In 2021, DFO expanded the KEBABB program to Barrow Strait (KEBABS-Knowledge and Ecosystem-Based Approach in Barrow Strait), a key productive area of the Tallurutiup Imanga National Marine Conservation Area. The study took place in the Eastern Canadian Arctic (mainly in Baffin Bay, Davis Strait and Barrow Strait). Sampling is done along transects at fixed stations in the study area. Catches are collected with a 1.5 m Agassiz trawl (5 mm mesh net) for 3 minutes bottom-contact time at a target speed of 1.5 knots and with a 3 m benthic beam trawl (6.4 mm mesh net) for 15 minutes bottom-contact time at a target speed of 3 knots. A total of 16 stations were sampled for epifauna in 2021 between 85-850 m depth. Epibenthic invertebrates are identified to the lowest possible taxonomic level and photographed. All unknown specimens are frozen. In the lab, the identifications are validated or refined with the photos and the frozen specimens.The data are presented in Darwin Core and are separated in two files:The “Activité_épifaune_KEBABB_epifauna_event_en” file which contains information about missions, stations and deployments, which are presented under a hierarchical activity structure.The “Occurrence_épifaune_KEBABB_epifauna_en” file that contains the taxonomic occurrences.Further details on sampling can be found in the following report: Pućko, M., Charette, J., Tremblay P., Brulotte S., St-Denis B., Ciastek S., Hedges, K., Kuzyk, Z., Roy V., and Michel, C. 2022. An ecosystem-based approach in the eastern Arctic: KEBABB/S (Knowledge and Ecosystem-Based Approach in Baffin Bay/Barrow Strait) 2021 expedition report. Can. Manuscr. Rep. Fish. Aquat. Sci. 3250: viii + 58 p. https://publications.gc.ca/collections/collection_2022/mpo-dfo/Fs97-4-3250-eng.pdfUSE LIMITATION:To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Emerald Basin on the Scotia Shelf off Nova Scotia, Canada, is home to a globally unique population of the glass sponge Vazella pourtalesi. Through the analysis of both in situ photographs and trawl catch data from annual multispecies bottom-trawl surveys, we examined community composition, species density, and abundance of epibenthos and fish associated with V. pourtalesi compared to locations without this sponge. Using generalized linear models and analysis of similarities, the importance of V. pourtalesi in enhancing species density and abundance of the associated epibenthic community was assessed against that of the hard substrate on which it settles. Our results indicated that the megafaunal assemblage associated with V. pourtalesi was significantly different in composition and higher in species density and abundance compared to locations without V. pourtalesi. Analysis of similarity of trawl catch data indicated that fish communities associated with the sponge grounds are significantly different from those without V. pourtalesi, although no species were found exclusively on the sponge grounds. Our study provides further evidence of the role played by sponge grounds in shaping community structure and biodiversity of associated deep-sea epibenthic and fish communities. The mechanism for biodiversity enhancement within the sponge grounds formed by V. pourtalesi is likely the combined effect of both the sponge itself and its attachment substrate, which together comprise the habitat of the sponge grounds. We also discuss the role of habitat provision between the mixed-species tetractinellid sponges of the Flemish Cap and the monospecific glass sponge grounds of Emerald Basin. Please refer to the following citation for additional details on the data:Hawkes N, Korabik M, Beazley L, Rapp HT, Xavier JR, Kenchington E (2019) Glass sponge grounds on the Scotian Shelf and their associated biodiversity. Mar Ecol Prog Ser 614:91-109. https://doi.org/10.3354/meps12903Cite this data as: Hawkes, Nickolas; Korabik, Michelle; Beazley, Lindsay; Rapp, Hans Tore; Xavier, Joana; Kenchington, Ellen (2019) Glass sponge grounds on the Scotian Shelf and their associated biodiversity. Published September 2023.Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/83c8e9af-ad3a-40bc-b1b7-d1ed4a069330

The Scotian Shelf population of northern bottlenose whales (Hyperoodon ampullatus) is listed as Endangered under Canada’s Species at Risk Act. Partial critical habitat was identified for this population in the Recovery Strategy first published in 2010 (Fisheries and Oceans Canada 2016), and three critical habitat areas were designated along the eastern Scotian Shelf, encompassing the Gully, Shortland Canyon, and Haldimand Canyon (shapefile available online: https://open.canada.ca/data/en/dataset/db177a8c-5d7d-49eb-8290-31e6a45d786c). However, the Recovery Strategy recognized that additional areas may constitute critical habitat for the population and recommended further studies based on acoustic and visual monitoring to assess the importance of inter-canyon areas as foraging habitat and transit corridors for northern bottlenose whales.In a subsequent study of the distribution, movements, and habitat use of northern bottlenose whales on the eastern Scotian Shelf (Stanistreet et al. in press), several sources of data were assessed and additional important habitat was identified in the inter-canyon areas located between the Gully, Shortland Canyon, and Haldimand Canyon (DFO 2020). A summary of the data inputs, analyses, and limitations is provided below.Year-round passive acoustic monitoring conducted with bottom-mounted recorders at two inter-canyon sites from 2012-2014 revealed the presence and foraging activity of northern bottlenose whales in these areas throughout much of the year, with a seasonal peak in acoustic detections during the spring. Detections from acoustic recordings collected during vessel-based surveys provided additional evidence of species occurrence in inter-canyon areas during the summer months. Photo-identification data collected in the Gully, Shortland, and Haldimand canyons between 2001 and 2017 were used to model the residency and movement patterns of northern bottlenose whales within and between the canyons, and demonstrated that individuals regularly moved between the three canyons as well as to and from outside areas. Together, these results indicated a strong degree of connectivity between the Gully, Shortland, and Haldimand canyons, and provided evidence that the inter-canyon areas function as important foraging habitat and movement corridors for Scotian Shelf northern bottlenose whales. The inter-canyon habitat area polygon was delineated using the 500 m depth contour and straight lines connecting the southeast corners of the existing critical habitat areas, but these boundaries are based on limited spatial information on the presence of northern bottlenose whales in deeper waters. More data are needed to determine whether this area fully encompasses important inter-canyon habitat, particularly in regard to the deeper southeastern boundary. Similarly, the full extent of important habitat for Scotian Shelf northern bottlenose whales remains unknown, and potential critical habitat areas outside the canyons and inter-canyon areas on the eastern Scotian Shelf have not been fully assessed. See DFO (2020) for further information.References:DFO. 2020. Assessment of the Distribution, Movements, and Habitat Use of Northern Bottlenose Whales on the Scotian Shelf to Support the Identification of Important Habitat. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2020/008. https://www.dfo-mpo.gc.ca/csas-sccs/Publications/SAR-AS/2020/2020_008-eng.html Fisheries and Oceans Canada. 2016. Recovery Strategy for the Northern Bottlenose Whale, (Hyperoodan ampullatus), Scotian Shelf population, in Atlantic Canadian Waters [Final]. Species at Risk Act Recovery Strategy Series. Fisheries and Oceans Canada, Ottawa. vii + 70 pp. https://www.canada.ca/en/environment-climate-change/services/species-risk-public-registry/recovery-strategies/northern-bottlenose-whale-scotian-shelf.html Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. In press. Distribution, movements, and habitat use of northern bottlenose whales (Hyperoodon ampullatus) on the Scotian Shelf. DFO Can. Sci. Advis. Sec. Res. Doc. [https://publications.gc.ca/collections/collection_2022/mpo-dfo/fs70-5/Fs70-5-2021-074-eng.pdf]Cite this data as: Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. Data of: Northern bottlenose whale important habitat in inter-canyon areas on the eastern Scotian Shelf. Published: June 2021. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/9fd7d004-970c-11eb-a2f3-1860247f53e3

DescriptionConservation of marine biodiversity requires understanding the joint influence of ongoing environmental change and fishing pressure. Addressing this challenge requires robust biodiversity monitoring and analyses that jointly account for potential drivers of change. Here, we ask how demersal fish biodiversity in Canadian Pacific waters has changed since 2003 and assess the degree to which these changes can be explained by environmental change and commercial fishing. Using a spatiotemporal multispecies model based on fisheries independent data, we find that species density (number of species per area) and community biomass have increased during this period. Environmental changes during this period were associated with temporal fluctuations in the biomass of species and the community as a whole. However, environmental changes were less associated with changes in species’ occurrence. Thus, the estimated increases in species density are not likely to be due to environmental change. Instead, our results are consistent with an ongoing recovery of the demersal fish community from a reduction in commercial fishing intensity from historical levels. These findings provide key insight into the drivers of biodiversity change that can inform ecosystem-based management.The layers provided represent three community metrics: 1) species density (i.e., species richness), 2) Hill-Shannon diversity, and 3) community biomass. All layers are provided at a 3 km resolution across the study domain for the period of 2003 to 2019. For each metric, we provide layers for three summary statistics: 1) the mean value in each grid cell over the temporal range, 2) the probability that the grid cell is a hotspot for that metric, and 3) the temporal coefficient of variation (i.e., standard deviation/mean) across all years.Methods:The analysis that produced these layers is presented in Thompson et al. (2022). The analysis uses data from the Groundfish Synoptic Bottom Trawl Research surveys in Queen Charlotte Sound (QCS), Hecate Strait (HS), West Coast Vancouver Island (WCVI), and West Coast Haida Gwaii (WCHG) from 2003 to 2019. Cartilaginous and bony fish species caught in DFO groundfish surveys that were present in at least 15% of all trawls over the depth range in which they were caught were included. This depth range was defined as that which included 95% of all trawls in which that species was present. The final dataset used in our analysis consisted of 57 species (Table S1 in Thompson et al. 2022).The spatiotemporal dynamics of the demersal fish community were modeled using the Hierarchical Modeling of Species Communities (HMSC) framework and package (Tikhonov et al. 2021) in R. This framework uses Bayesian inference to fit a multivariate hierarchical generalized mixed model. We modeled community dynamics using a hurdle model, which consists of two sub models: a presence-absence model and a biomass model that is conditional on presence. Our list of environmental covariates included bottom depth, bathymetric position index (BPI), mean summer tidal speed, substrate muddiness, substrate rockiness, whether the trawl was inside or outside of the ecosystem-based trawling footprint, and survey region (QCS & HS vs. WCVI & WCHG)), mean summer near-bottom temperature deviation, mean summer near-bottom dissolved oxygen deviation, mean summer cross-shore and along-shore current velocities near the seafloor, mean summer depth-integrated primary production, and local-scale commercial fishing effort.Layers are provided for three community metrics. All metrics should be interpreted as the value that would be expected in the catch from an average tow in the Groundfish Synoptic Bottom Trawl Research Surveys taken in a given 3 km grid cell. Species density (sometimes called species richness) should be interpreted as the number of the 57 species that would be caught in a trawl. Hill-Shannon diversity is a measure of diversity that gives greater weight to communities where biomass is spread equally across species. Community biomass is the total biomass across all 57 species that would be expected to be caught per square km in an average tow. Data Sources:Research data was provided by Pacific Science's Groundfish Data Unit for research surveys from the GFBio database between 2003 and 2019 that occurred in four regions: Queen Charlotte Sound, Hecate Strait, West Coast Haida Gwaii, and West Coast Vancouver Island. Our analysis excludes species that are rarely caught in the research trawls and so our estimates would not include the occurrence or biomass of these rare species.Commercial fishing data was accessed through a DFO R script detailed here: https://github.com/pbsassess/gfdata. Local scale commercial fishing effort was calculated from this data. The substrate layers were obtained from a substrate model (Gregr et al. 2021). The oceanographic layers (bottom temperature, dissolved oxygen, tidal and circulation speeds, primary production) were obtained from a hindcast simulation of the British Columbia continental margin (BCCM) model (Peña et al. 2019).Uncertainties:Species that are not well sampled by the trawl surveys may not be accurately estimated by our model. The model did not include spatiotemporal random effects, which likely underestimates spatiotemporal variability in the region. It is also important to underline covariate uncertainty and model uncertainty. The hotspot estimates provide one measure of model uncertainty/certainty.

Zooplankton and ichthyoplankton data are archived in the Institute of Ocean Sciences (IOS) Zooplankton Database. The data available spans from 1980 to 2018 and is an extraction of vertical net hauls as biomass by major taxa collected during surveys conducted in the oceanic and coastal waters of the Northeast Pacific Ocean. The majority of vertical net hauls in this data set were collected from 10 metres above the sea floor or an approximate maximum depth of 250 metres. For further data requests, please use the contact information provided.

In this dataset, we share maps of annual dominant tree species (also known as leading tree species) from 1984-2022 covering the entirety of Canada's 650 Mha forested ecosystems using Landsat time-series imagery at a 30-m spatial resolution. It is developed within the framework of Canada’s National Terrestrial Ecosystem Monitoring System (NTEMS). Classifications are based on regionally representative Random Forests model using local training samples from Canada's National Forest Inventory (Hermosilla et al., 2024). Descriptive metrics provide information on spectral, geographic, climatic, and topographic characteristics. Initial annual tree species classifications were subjected to a time series post-classification process using the forward-backward Hidden Markov Model to improve the temporal consistency of tree species transitions within the time series. Assessment of the annual species maps using independent validation data resulted in an overall accuracy of 86.1% ± 0.14% (95%-confidence interval). These data allow consistent comparison of trends and rates of change in tree species composition nationally and across regions using a common time frame, spatial resolution, and analytical approach.Hermosilla, T., Wulder, M.A., White, J.C., Coops, N.C., Bater, C.W., Hobart, G.W., 2024. Characterizing long-term tree species dynamics in Canada's forested ecosystems using annual time series remote sensing data. Forest Ecology and Management, 122313. https://doi.org/10.1016/j.foreco.2024.122313 (Hermosilla et al. 2024)