Basic biological data for all fish caught during the 2012 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level.

Effective conservation planning relies on understanding population connectivity which can be informed by genomic data. This is particularly important for sessile species like the horse mussel (Modiolus modiolus), a key habitat-forming species and conservation priority in Atlantic Canada), yet little genomic information is available to describe horse mussel connectivity patterns. We used more than 8000 restriction-site associated DNA sequencing-derived single nucleotide polymorphisms and a panel of 8 microsatellites to examine genomic connectivity among horse mussel populations in the Bay of Fundy, along the Scotian Shelf, and in the broader northwestern Atlantic extending to Newfoundland. Despite phenotypic differences between sampling locations, we found an overall lack of genetic diversity and population structure in horse mussels in the Northwest Atlantic Ocean. All sampled locations had low heterozygosity, very low FST, elevated inbreeding coefficients, and deviated from Hardy-Weinberg Equilibrium, highlighting generally low genetic diversity across all metrics. Principal components analysis, Admixture analysis, pairwise FST calculations, and analysis of outlier loci (potentially under selection) all showed no independent genomic clusters within the data, and an analysis of molecular variance showed that less than 1% of the variation within the SNP dataset was found between sampling locations. Our results suggest that connectivity is high among horse mussel populations in the Northwest Atlantic, and coupled with large effective population sizes, this has resulted in minimal genomic divergence across the region. These results can inform conservation design considerations in the Bay of Fundy and support further integration into the broader regional conservation network.Cite this data as: Van Wyngaarden, Mallory et al. (2024). Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus. Published: May 2025. Coastal Ecosystem Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth, NS.

Since 1985, research surveys targeting scallops—primarily the sea scallop (Placopecten magellanicus) and, to a lesser extent, the Icelandic scallop (Chlamys islandica)—have been conducted by Fisheries and Oceans Canada (DFO) at one- or two-year intervals around the Magdalen Islands (fishing area 20A). The main objective of this survey is to assess the status of sea scallop stocks. The study area is situated south of the Magdalen Islands, where scallop beds are typically sampled at depths ranging from approximately 25 to 35 m. Sampling stations are randomly selected from a predetermined fixed grid, with sampling conducted along transects at these randomly assigned locations within the study area. Each station is sampled using a lined Digby scallop dredge (20 mm mesh size), towed for roughly 500 m across the seabed.This publication includes three files: the file biometriePetoncle_20, which contains detailed biometric data (species, size, weights and sex) from 1998 to 2024; the file taillePetoncle_20, which provides the size of the individuals sampled from 2009 to 2024; and the file traitPetoncle_20 which contains the abundances and densities per tow from 2009 to 2024. Data on abundances and densities per tow from 1998-2008 is available upon request.This dataset is updated every one to two years as data becomes available. A cleaning of aberrant data has been carried out. However, there is missing data in various columns of the dataset – use the data with caution. If you have any questions please contact DFO.DataManagementSAISB-GestionDonneesDAISS.MPO@dfo-mpo.gc.ca or the author. For certain time periods, associated species are identified and semi-quantitatively counted directly on the sorting table, and the results are presented in the following publications: - https://open.canada.ca/data/en/dataset/6529a4b0-f863-4568-ac71-1fa26cf68679- https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53b 

The data in this dataset represent an amalgamation of sea turtle sighting, stranding, and entrapment events, mainly near Newfoundland and Labrador (NL), Canada.This document summarises the detection events data for Leatherback (Dermochelys coriacea), Loggerhead (Caretta caretta), and Green (Chelonia mydas) Turtles that has been collected from opportunistic and systematic survey sources, plus stranding and entrapment records, in the waters of NL from 1946 to 2023. To a much lesser extent there are also detection records for the southern Gulf of St. Lawrence. Scotian Shelf, and northeastern U.S. waters.These detection records are mostly derived from opportunistic reports, so there are rarely data for a report that includes measures of the observer effort expended to make the detection, and rarely associated imagery. During DFO aerial surveys there are measures of effort in most cases, enabling the turtle sightings reports to be used in habitat modelling (e.g., Mosnier et al. 2018).Most of the information variables (such as “Date”, “Latitude”, “Longitude”, “Number of Animals”) have been obtained from the detection report. In some cases data for variables such as “Location Reliability”, “ID Reliability”, “Platform”, and “Strand or Entrapment Outcome” were derived from interpretation of the comments associated with the report, if available. For description of the variables in the dataset see the Data Dictionary.References:Mosnier, A., Gosselin, J.-F., Lawson, J., Plourde, S., and Lesage, V. 2018. Predicting seasonal occurrence of leatherback turtles (Dermochelys coriacea) in eastern Canadian waters from turtle and sunfish (Mola mola) sighting data and habitat characteristics. Can. J. Zool. 97: 464-478. https://doi.org/10.1139/cjz-2018-0167

A research survey of scallops (mainly sea scallop Placopecten magellanicus, but also Icelandic Scallop Chlamys islandica) using a dredge was carried out by DFO (Fisheries and Oceans Canada) every 1 or 2 years since 1992 in the Magdalen Islands (fishing area 20). The main objective of this research survey was to assess Sea Scallop stocks. Another objective was to document taxa associated with scallop habitat according to a fixed random sampling plan. Occurrences for the year 2021 and 2022 are presented by species (or taxon) by station. Starting in 2021, catches were weighed, and specimens photographed, with information available upon request. The taxonomic and geographical validity of the data was checked and the World Register of Marine Species served as the taxonomic authority for naming all taxa recorded during the survey. Epibenthic invertebrates (mainly molluscs, echinoderms and crustaceans) as well as demersal fish were identified from the dredge catches. The historical dataset is available at the following link : https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53bThe study area is located south of the Magdalen Islands and the sampling of scallop beds is carried out at depths of generally around 25 to 35 m. A random selection of sampling stations is carried out from a fixed station grid. Sampling is done along transects at these randomly drawn stations in the study area. Sampling is done with a lined Digby scallop dredge (20 mm mesh) over approximately 500 m along the seabed. The four baskets of the dredge are examined for all scallops, and starting in 2022, also for all fishes. One basket (first on the starboard side) is sorted and examined for associated species. Most specimens are counted by taxa. Those that are too small and numerous, or colonial, are noted for presence or relative abundance. Special cases are occasionally conserved for taxonomic analysis, for example, ascidians (to monitor for invasive species) and sponges (to document new species). The availability of photos and some conserved specimens enables future review. Changes are anticipated in the identifications, notably for Bryozoan, Hydrozoa, and Porifera, that are currently the focus of research efforts.

Records of marine mammal sightings (N = 5,324) collected by ASOs and submitted to Fisheries and Oceans Canada (DFO) between 1979-2024, across three DFO regions: the Arctic, Newfoundland and Labrador, and the Maritimes. Methods for initial data compilation are provided in the associated technical report "Marine mammal records collected by the at-sea observer (ASO) program in Arctic, Newfoundland and Labrador, and Maritimes regions: a summary of challenges and opportunities for future research." Cite this data as: Feyrer, L.J., Colbourne, N., Lawson, J.W., Moors-Murphy, H.B., Ferguson, S. Dataset update to Marine mammal records collected by the At-Sea Observer program in Arctic, Newfoundland and Labrador and Maritimes regions. Published: February 2025. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.

Across the Canadian North, Arctic Char, Salvelinus alpinus, are culturally important and critical for maintaining subsistence lifestyles and ensuring food security for Inuit. Arctic Char also support economic development initiatives in many Arctic communities through the establishment of coastal and inland commercial char fisheries. The Halokvik River, located near the community of Cambridge Bay, Nunavut, has supported a commercial fishery for anadromous Arctic Char since the late 1960s. The sustainable management of this fishery, however, remains challenging given the lack of biological data on Arctic Char from this system and the limited information on abundance and biomass needed for resolving sustainable rates of exploitation. In 2013 and 2014, we enumerated the upstream run of Arctic Char in this system using a weir normally used for commercial harvesting. Additionally, we measured fish length and used T-bar anchor tags to mark a subset of the run. Subsequently, we estimated population size using capture-mark-recapture (CMR) methods. The estimated number of Arctic Char differed substantially between years. In 2013, 1967 Arctic Char were enumerated whereas in 2014, 14,502 Arctic Char were enumerated. We attribute this marked difference primarily to differences in weir design between years. There was also no significant relationship between daily mean water temperature and number of Arctic Char counted per day in either year of the enumeration. The CMR population estimates of Arctic Char (those ≥450mm in length) for 2013 and 2014 were 35,546 (95% C.I 30,513-49,254) and 48,377 (95% C.I. 37,398-74,601) respectively. The 95% CI overlapped between years, suggesting that inter-annual differences may not be as extreme as what is suggested by the enumeration. The population estimates reported here are also the first estimates of population size for an Arctic Char stock in the Cambridge Bay region using CMR methodology. Overall, the results of this study will be valuable for understanding how population size may fluctuate over time in the region and for potentially providing advice on the sustainable rates of harvest for Halokvik River Arctic Char. Additionally, the results generated here may prove valuable for validating current stock assessment models that are being explored for estimating biomass and abundance for commercial stocks of Arctic Char in the region.

The Brier Island/Digby Neck area has been identified as an Ecologically and Biologically Significant Area (EBSA) by Fisheries and Oceans Canada and is one of four marine areas within the Bay of Fundy recognised by Parks Canada as of national significance for marine conservation planning. The area is representative of important outer Bay of Fundy features with significant marine mammal, bird, and benthic diversity including potentially important aggregations of sensitive benthic species such as horse mussel and sponge. Much of the information used for this recognition is now over 40 years old and should be re-validated using standardised georeferenced survey methods. As a first phase, a diver-based survey of the sublittoral habitats and associated species was conducted in August and September of 2017 for the Brier Island area. This report summarises the major sublittoral habitat types, species assemblages, and oceanographic conditions observed at 20 locations including Northwest and Southwest Ledges, Gull Rock, Peter’s Island, and Grand Passage. A total of 962 records were made of 178 taxa, consisting of 43 algae and 135 animals. Comparison with historical records largely confirmed the continued presence of unique habitats and species assemblages for which this area was initially recognised as an EBSA. Differences in species richness observed for cryptic and less known taxonomic groups such as sponges and bryozoans were attributable to changes in survey methods and knowledge. Based on these findings, additional surveys of inshore and offshore Brier Island using more quantitative methods developed for other Bay of Fundy EBSAs would further support regional MPA network planning and provide relative scales of species diversity and habitat coverage for this area.

Cold-water corals are conspicuous in the waters off Eastern Canada. Despite that, there are few DNA sequence records from specimens collected in the region available in GenBank, and not all species recorded in the region have sequence data regardless of geographic origin. This can limit the use of eDNA techniques to detect and identify corals. Our objective was to sequence and publish sequences for two octocoral DNA barcoding markers: CO1 and MutS. We sequenced and deposited 36 sequences to GenBank from 19 specimens representing three sea pen taxa (Octocorallia: Pennatuloidea): Distichoptilum gracile, Pennatula aculeata, and Protoptilum carpenteri. Identification of all specimens was confirmed by B. M. Neves before submission. Specimens and DNA tissues were donated to the Canadian Museum of Nature, where they are currently stored. This publication is part 1 of a series of GenBank submissions by our lab.Specimens were collected from across the Northwest Atlantic and originate from depths ranging between 200-1924 meters. Specimens were collected as part of research vessel multispecies trawl surveys or remotely operated vehicle (ROV ROPOS) surveys. DNA was isolated and purified using the QIAgen DNeasy Blood and Tissue kit, with an initial overnight incubation with Proteinase K. Two commonly used octocoral barcoding regions were amplified using previously described primers: 1) COII8068F (McFadden et al., 2004) and COIOCTR (France and Hoover, 2002) for the CO1 gene, and 2) ND42599F (France and Hoover, 2002) and mut3458R (Sánchez et al., 2003) for the MutS gene. Amplifications were conducted using 12.5 µl of Green DreamTaq Master Mix (Thermo Fisher Scientific), 1 µl of template DNA, 0.5 µl of each 10 µM forward and reverse primers, 0.5 µl of 10 µM reverse primer, and 10.5 µl of water. Thermocycling was run as follows: 3 min of initial denaturation at 95 °C, followed by 40 cycles at 95 °C for 30 s, 30 s at annealing temperature of 48 °C, then 65 s at an extension temperature of 72 °C, and a final elongation at 72 °C for 4 min. PCR products were cleaned using Agencourt AMPure XP Beads (Beckman Coulter) and sent to The Center for Advanced Genomics, Toronto, Canada for Sanger sequencing. Sequences were visualized and aligned using Geneious Prime 2022.0.2. Obtained sequences have been deposited in GenBank under accession numbers OQ569768- OQ569784 and OQ420359- OQ420377. This work was funded by Fisheries and Oceans Canada under an Enhanced Regional Capacity grant (2020-2021) and the Marine Conservation Targets (MCT) program (2021-2024), Newfoundland and Labrador Region.

These data consist of the Recreational Shark Fishing Tournament landings database (1993-2022 inclusive) and the Canadian Dart tag database (2006 onwards; updated annually). Both were collected by the Maritimes Science Division of Fisheries and Oceans Canada. The landings records include biological sampling from 4266 animals and the dart tag records include 4138 tagging and 97 recapture events to date. Potential users should consult Bowlby et al. (2022) for the description, management history, and technical details pertaining to these data. Information is focused on Blue Sharks because they were the primary species captured at recreational tournaments.Cite this data as: Bowlby, H., Joyce, W. Recreational Shark Fishing Tournament Landings Data and Canadian Dart Tag Database. Published January 2023 . Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/4309f1f7-6779-416d-9660-c02f0f99b482