This data set includes the locations of all known seabird colonies along the coast of British Columbia, and provides a compilation of the population estimates of seabirds breeding at those colonies since 1980, and historical estimates prior to 1980 for some colonies. It does not include an estimate of the numbers of juvenile birds or non-breeders in the population.The rationale for developing this inventory was the recognized need for a product that could assist with: coastal zone and conservation area planning; emergency response to environmental emergencies and identifying areas of potential interactions between seabirds and anthropogenic activities. In addition, the data used to develop the document provides a baseline to compare with future seabird population estimates in order to measure the impacts of shifts in composition, abundance and/or distribution of prey, and climatic and oceanographic changes. The database is not a substitute for on-site surveys usually required for environmental assessment.Here we present data on the breeding colony population estimates of the 17 species of seabirds (including two storm petrels, three cormorants, one gull, and eight alcids) and one shorebird (Black Oystercatcher Haematopus bachmani) that breed on the coast of British Columbia. Over 5.5 million colonial birds are currently estimated to nest at 649 sites (Rodway et al. 2024). Five species (Cassin's Auklets Ptychoramphus aleuticus, Fork-tailed Storm-petrels (Hydrobates fucatus), Rhinoceros Auklets Cerorhinca monocerata, Ancient Murrelets Synthliboramphus antiquus, and Leach's Storm-petrels (Hydrobates leucorhous), comprise the vast majority of that population, although Black Oystercatchers (Haematopus bachmani), Pigeon Guillemots (Cepphus columba), and Glaucous-winged Gulls (Larus glaucescens), nest at the most sites. Marbled Murrelets (Brachyramphus marmoratus), which nest on the mossy limbs of mature and old-growth trees within the coastal forests, are not included in this database, due to their dispersed nesting habit.The population estimates presented in this database are compiled from the results of several surveys. Many of the seabird breeding colonies in British Columbia have been known for more than 50 years, but because of the remoteness of the sites, visits to them have been rare. The majority of the data are the results of comprehensive inventories of colonial nesting seabirds along the British Columbia coastline conducted between 1974 and 1977 by the British Columbia Provincial Museum (BCPM; now Royal British Columbia Museum ) and between 1980 and 1989 by the Canadian Wildlife Service of Environment and Climate Change Canada (CWS). The goal of the BCPM surveys was to explore the entire BC coast to identify seabird nesting sites. Reliable, quantitative data were gathered on the breeding populations of all surface-nesting seabird species and rough estimates of population sizes were made for burrow-nesting species. The goal of the CWS survey program was to establish baseline estimates of breeding populations of burrow-nesting species in BC using standardized survey techniques to allow future comparisons and monitoring of those populations. During the 1980s, repeat surveys of surface-nesting species were also conducted by CWS in most regions of the BC coast. A few colonies on small remote islands were not visited during those surveys. Therefore, for some colonies the most current population estimates are from the first complete survey of the BC coastline, carried out by the Royal British Columbia Museum in the mid 1970’s.Since 1989, surveys have been conducted by CWS on some alcid, cormorant and gull colonies along the BC coast, and results have been included in the dataset (data entry ongoing). As well as data from CWS surveys, we have attempted to obtain recent data from all other sources including Parks Canada, Transport Canada, the BC Ministry of Forests, Lands, Natural Resource Operations and Rural Development, the City of Vancouver, the Bamfield Marine Station, and the Laskeek Bay Conservation Society. Since 2000, inventories of nesting BlackOystercatchers have been conducted in some regions of the coast by Parks Canada and partners (Gulf Islands National Park Reserve, Pacific Rim National Park Reserve, and Gwaii Haanas National Park Reserve) and results have been included in the dataset (data entry ongoing). A long time series of nesting Black Oystercatcher data collected by Laskeek Bay Conservation Society in the Laskeek Bay area of the East Coast of Moresby Island has also been included in this dataset.

The atlas provides printable maps, Web Services and downloadable data files representing seabirds at-sea densities in eastern Canada.The information provided on the open data web site can be used to identify areas where seabirds at sea are found in eastern Canada. However, low survey effort or high variation in some areas introduces uncertainty in the density estimates provided. The data and maps found on the open data web site should therefore be interpreted with an understanding of this uncertainty.Data were collected using ships of opportunity surveys and therefore spatial and seasonal coverage varies considerably. Densities are computed using distance sampling to adjust for variation in detection rates among observers and survey conditions. Depending on conditions, seabirds can be difficult to identify to species level. Therefore, densities at higher taxonomic levels are provided. more details in the document: Atlas_SeabirdsAtSea-OiseauxMarinsEnMer.pdf.By clicking on "View on Map" you will visualize a example of the density measured for all species combined from April to July - 2006-2020. ESRI REST or WMS map services can be added to your web maps or opened directly in your desktop mapping applications. These are alternatives to downloading and provide densities for all taxonomical groups and species as well as survey effort.

The Atlantic Colonial Waterbird Monitoring database captures geo-referenced data collected under the Atlantic Region’s Canadian Wildlife Service (CWS) Colonial Seabird Monitoring program, and data collected under CWS’ waterfowl and protected areas programs. These programs collectively monitor 22 species of colonial waterbirds breeding in the Atlantic Region of the following groups: fulmars, shearwaters, storm-petrels, gannets, gulls, terns, alcids, eiders, herons and cormorants, with the primary outcome to update information on the distribution, status, and trends of waterbirds breeding in all four Atlantic provinces. Surveys are conducted using one of three platforms: aerial, boat, or ground. Aerial surveys provide the most cost-effective way of conducting a comprehensive population census of diurnal species visible from air, namely gulls (Herring, Great Black-backed, Ring-billed, Glaucous), Black-legged Kittiwakes, Northern Gannets, terns (Arctic, Common, Roseate, Caspian), cormorants (Greater, Double-crested), Black Guillemots, and Common Eiders.Aerial surveys are also effective in identifying new colonies and provide additional information on how to most effectively conduct boat and ground surveys. Boat and ground surveys are conducted at smaller geographic scales and are necessary to obtain complementary information on the species composition of colonies and correction factors to finalize gull, tern and eider estimates obtained from the aerial surveys. Ground and/or boat surveys are also necessary to conduct colony counts of cliff-nesting birds (murres and fulmars), crevice nesting birds (razorbills and guillemots) and burrow-nesting birds (puffins, storm-petrels, shearwaters). Raw data are captured using various survey methods, including:1) visual estimates, 2) direct counts of number of individuals or apparently occupied sites and/or photo counts, 3) sub-sampling the colony through plot counts and extrapolating the estimated occupied densities over the occupied area which in turn is estimated using a variety of geographic information system approaches (e.g., Wilhelm et al. 2015). Important outcomes for how data are used include informing marine spatial planning, emergency preparedness, impact assessment of various anthropogenic threats, and COSEWIC status assessment (e.g., COSEWIC 2020). Further, these data are regularly used internally or in collaboration with partners to form the basis of peer-reviewed publications on regional, national, and/or global population trends for target species (e.g., Langlois Lopez et al. 2022, Iles et al. 2025).This dataset represents a subset of data collected from surveys led by CWS spanning from 1910 to 2024 and summarized to present, at a given colony, the year and count of birds from the most recent survey, the year and maximum count of birds within the last 20 years (if available), and the year and maximum count of birds ever recorded. In addition, CWS works closely with a variety of partners (e.g., provincial, other federal departments, academic, not-for profit organizations) to supplement colonial waterbird data collected in the Atlantic Region. To request additional census or survey data, please contact CWS.COSEWIC. 2020. COSEWIC assessment and status report on the Leach’s Storm-Petrel (Atlantic population) Oceanodroma leucorhoa in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. xii + 70 pp. (https://www.canada.ca/en/environment-climate-change/services/species-risk-public-registry.html). Iles, D.T., S.E. Gutowsky, A.M. Calvert, S.I. Wilhelm, J.-F. Rail, A. Hedd, H.L. Major, A.C. Smith, and G.J. Robertson. 2025. Estimating regional trajectories and trends of seabirds from sparse and inconsistent colony counts: case studies from eastern Canada with Leach’s Storm-Petrel and Atlantic Puffin. Avian Conservation and Ecology 20(2):16. https://doi.org/10.5751/ACE-02931-200216Langlois Lopez, S., Bond, A.L., O’Hanlon, N.J., Wilson, J.M., Vitz, A., Mostello, C.S., Hamilton, F., Rail, J.-F., Welch, L., Boettcher, R., Wilhelm, S.I., Anker-Nilssen, T., Daunt, F., and Masden, E. 2022. Global population and conservation status of the Great Black-backed Gull Larus marinus. Bird Conservation International, 1–11. https://doi.org/10.1017/S0959270922000181Wilhelm, S.I., Mailhiot, J., Arany, J., Chardine, J.W., Robertson, G.J., and Ryan, P.C. 2015. Update and trends of three important seabird populations in the western North Atlantic using a geographic information system approach. Marine Ornithology 43: 211-222.

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-present). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. However, comparative analyses have been carried out between vessels, and conversion factors are available on request for a number of species. The specificities of the missions onboard the CCGS Teleost are described below.Objectives:1. Assess groundfish and northern shrimp population abundance and condition2. Assess environmental conditions3. Conduct a biodiversity inventory of benthic and demersal megafauna4. Assess phytoplankton and mesozooplankton abundance5. Monitor the pelagic ecosystem6. Inventory marine mammals populations7. Inventory seabirds populations8. Collect samples for various research projectsSurvey descriptionThe survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary in order to sample the depths between 37 and 183 m. A stratified random sampling strategy is used for this survey and the area of the study area is 118,587 km². The fishing gear used on the CCGS Teleost is a four-sided Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The target towing speed is 3 knots.DataFor each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, Greenland halibut, and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed.The biological data are divided into 3 files: a “Stations” file containing set information, a “Catches” file containing catches per set for all species caught and a “Carbio” file containing biological and morphometric measurements per individual all species measured except shrimps. The columns source_info, no_survey, nbpc and station_number serve as a common key linking the three datasets. To further link the “Captures” and the “Carbio” files to the species level (for fish and certain invertebrate species), use the columns source_info, no_survey, nbpc, station_number, strap_code, and category. Further shrimp biological and morphometric data are available but are not presented here in order to simplify data presentation. For access to the complete information, please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca). The latest published data is preliminary and will be updated at the end of January of the following year.It's important to note that this is raw data. Only set considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Harbour seals reside throughout the year around Newfoundland and Labrador (NL). The first systematic survey for harbour seals occurred along the NL Shelf during July and August 2021 to obtain counts of hauled out individuals and assess distribution. Grey seals are seasonal residents in NL, mainly present in the summer and autumn months. Grey seals were also recorded during the survey as these two species can share haul-out locations. Surveys were flown along the coastline with a Bell 429 helicopter with photographs taken of hauled out seals. This data includes the counts of hauled out harbour, grey and unknown seals seen during the survey. Adjusted counts are also provided, which assign the unknown seals to species based on the number of positively identified harbour and grey seals from each survey day. The realized survey coverage (survey tracks) is also included. Cite this data as: Hamilton, C.D., Goulet, P.J., Stenson, G.B., and Lang, S.L.C. 2024. Data of: Counts of harbour seals (Phoca vitulina) and grey seals (Halichoerus grypus) from an aerial survey of the coast of the Newfoundland Shelf and Sandwich Bay, Labrador during the summer of 2021This data can be found in: Hamilton, C.D., Goulet, P.J., Stenson, G. B., and Lang, S.L.C. 2023. Counts and spatial distribution of harbour seals (Phoca vitulina) and grey seals (Halichoerus grypus) from an aerial survey of the coast of the Newfoundland Shelf and Sandwich Bay, Labrador during the summer of 2021. Can. Tech. Rep. Fish. Aquat. Sci. 3566: v + 39 p. https://publications.gc.ca/site/eng/9.927831/publication.html DFO. 20XX. Stock assessment of Atlantic harbour seals (Phoca vitulina vitulina) in Canada for 2019-2021. DFO Can. Sci. Advis Sec. Sci. Advis. Rep. 2023/XXX. Lang, S.L.C., St-Pierre, A.P., Hamilton, C.D., Mosnier, A., Lidgard, D.C., Goulet, P., den Heyer, C.E., Bordeleau, X., Irani, A.I., and Hammill, M.O. 20XX. Population status assessment and Potential Biological Removal (PBR) for the Atlantic harbour seal (Phoca vitulina vitulina) in Canadian waters. DFO Can. Sci. Advis. Sec. Res. Doc. 2024

An exploratory fishery was carried out in the Mackenzie River Delta between 1989 and 1993 at the request of the Inuvik Hunters and Trappers Committee to assess the commercial fishery potential in this area. Data collected during this exploratory fishery was used in two technical reports. Broad whitefish were the target species of this fishery (DFO Technical Report 2180), however other species such as northern pike, inconnu, and lake whitefish were also harvested (DFO Technical Report 2330).Biological data from broad whitefish (fork length, age, gonadosomatic index and instantaneous mortality) were analyzed to assess the impact of an exploratory fishery in the Mackenzie River Delta. The data were collected using variable mesh experimental gill nets and commercial harvesters' 139 mm (5.5”) mesh gill nets. The data suggest that the broad whitefish population might be separated, with larger mature spawners gathering in the main channels prior to spawning and smaller, immature or resting fish staying in side channels away from strong currents. From this analysis we conclude that the size and structure of the broad whitefish population(s) found in this area are stable at the current level of total harvest (commercial and subsistence combined) There may be room for increased harvests but to what level is uncertain.Biological data from northern pike, inconnu, and lake whitefish were analyzed to assess the impact of the fishery on population abundance and structure. All three by catch species support subsistence fisheries in the Mackenzie Delta. lnconnu and lake whitefish migrate substantial distances, crossing land claim borders and are likely fished by a variety of user groups. Northern pike, on the other hand tend to be non-migratory with localized populations that are mainly fished by people living in the near vicinity. A concern was that commercial fishing pressure might reduce the numbers of fish available to subsistence users. Based on trends in size and age frequency, age at maturity, sex ratio, growth rates, and mortality rates, we conclude that inconnu and lake whitefish populations in the Mackenzie Delta have remained healthy and stable at the current harvest levels, however northern pike populations showed a decrease in the proportion of older fish, possibly indicating over-fishing of local stocks. lnconnu and lake whitefish may be able to withstand increased harvest, but to what extent is unknown, given that little reliable information is available on subsistence harvest levels in this region. Increasing harvest levels of pike may be risky and we suggest that a reduction of current commercial harvest quotas be considered.

The North Shore of the Lower Estuary (Upper North Shore, Quebec) is a productive coastal system where many commercial species of benthic invertebrates are fished in the infralittoral (10-20 m) and circalittoral (20-50 m) zone. However, little data exist on the biodiversity of non-commercial species and the environmental characteristics of the benthic habitat in this area. Two scientific surveys were conducted in 2018 and 2019 to address this knowledge gap by developing a framework of biodiversity and environmental (water column and seafloor) data taking that will be used to determine the baseline state of the benthic ecosystem in this region.Surveys were conducted in 2018 (August 11-14) and 2019 (July 30-August 5) in the Upper North Shore region (between the towns of Forestville and Godbout). Surveys followed a fixed sampling design of eight transects perpendicular to bathymetry with stations at 10 m depth intervals in a bathymetry range of 10-50 m for a total of approximately 40 stations per survey. Specimens were collected with a beam trawl with an opening of 2.8 m. The hauls were made at a target speed of 2 knots and a target duration of 7 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library of R. The average tow distance was approximately 425 m. The area covered at each tow was the product of the trawl opening and the distance traveled. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

This dataset was compiled as part of a multiyear effort lead by Fisheries and Oceans Canada (DFO) to support sustainable aquaculture regulation in the Coast of Bays, an area of the south coast of Newfoundland. It is the second of a series aiming to provide an oceanographic knowledge baseline of the Coast of Bays.This dataset includes temperature, salinity, and dissolved oxygen concentration profiles collected during CTD surveys, each survey containing a varying number of casts/profiles taken within the area of interest. In total, 760 profiles from 11 surveys, executed over 276 stations, were collected from June 2009 to November 2013. Data were processed and quality controlled using the instrumentation manufacturer guidelines, custom tools as well as visual inspection. Data are provided in tab-delimited text-based format compatible with most data processing language and tools (e.g. MS. Excel) as well as with the Ocean Data View software (https://odv.awi.de/) for rapid visualisation. A summary of the CTD profiles and stations surveyed is also provided as a comma separated values (CSV) file.A full description of the data and of its use in the context of the motivating project can be found in http://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2017/2017_077-eng.html. Analyses from this dataset were presented during a Canadian Science Advisory Secretariat (CSAS) meeting which took place in St John’s in March 2015 (http://www.dfo-mpo.gc.ca/csas-sccs/schedule-horraire/2015/03_25-26b-eng.html) and from which a Science Advisory Report (http://www.dfo-mpo.gc.ca/csas-sccs/Publications/SAR-AS/2016/2016_039-eng.html) and Proceedings (http://www.dfo-mpo.gc.ca/csas-sccs/Publications/Pro-Cr/2017/2017_043-eng.html) were published.

Benthic Marine Ecounits in coastal and offshore British Columbia. Benthic ecounits are intended to describe the sea bed and nearshore. Seven variables were selected to derive benthic ecounits: 1. Depth; 2. Slope; 3. Relief; 4. Temperature; 5. Exposure; 6. Current and 7. Substrate. CRIMS is a legacy dataset of BC coastal resource data that was acquired in a systematic and synoptic manner from 1979 and was intermittently updated throughout the years. Resource information was collected in nine study areas using a peer-reviewed provincial Resource Information Standards Committee consisting of DFO Fishery Officers, First Nations, and other subject matter experts. There are currently no plans to update this legacy data.

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S).The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined.The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute.This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems.Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a